{"id":"W7157610250","doi":"10.5061/dryad.6djh9w15w","title":"Multi-locus phylogeny of <em>Bryoria</em> reveals recent diversification and unexpected diversity in section Divaricatae","year":2024,"lang":"en","type":"dataset","venue":"DRYAD","topic":"","field":"","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Academy of Finland","keywords":"Polyphyly; Phylogenetic tree; Phylogenetics; Monophyly; Clade; Taxonomy (biology); Taxonomic rank","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0007630892,0.0005655594,0.0008036894,0.0012222,0.0002443294,0.00008501675,0.0006829035,0.0007055993,0.0001855414],"category_scores_gemma":[0.0004560437,0.0006068381,0.0001380947,0.001913873,0.0001634033,0.0002218648,0.001739571,0.0009227065,0.002564166],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009318949,"about_ca_system_score_gemma":0.00009434459,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003501351,"about_ca_topic_score_gemma":0.00539459,"domain_scores_codex":[0.9964594,0.000426902,0.0007171662,0.00120971,0.000722701,0.00046416],"domain_scores_gemma":[0.9975369,0.0001421636,0.0007005106,0.00114804,0.0003023205,0.0001700923],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002219722,0.000489719,0.001344339,0.0004866757,0.0002223966,0.00005145954,0.001047946,0.000007920922,0.0080311,0.000003257388,0.9873306,0.0007626361],"study_design_scores_gemma":[0.002566995,0.0001814043,0.126846,0.0005532463,0.001096174,0.00001513087,0.00117493,0.0001229723,0.0005031773,0.0001663201,0.8656424,0.001131292],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.04080252,0.001429025,0.00001186744,0.00002648215,0.001416075,0.0009510599,0.955195,0.000144547,0.00002342397],"genre_scores_gemma":[0.0210942,0.001960226,0.0002352148,0.0000208336,0.0002660532,0.00004297744,0.976196,0.00007368529,0.0001108321],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.1255016,"threshold_uncertainty_score":0.9996383,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04480462932313975,"score_gpt":0.2834382667779242,"score_spread":0.2386336374547844,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}