{"id":"W7161987023","doi":"10.82308/53799","title":"An investigation of disease transmission clusters with Bayesian phylogenetic clustering methods","year":2018,"lang":"en","type":"dissertation","venue":"","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Disease transmission; Transmission (telecommunications)","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01274792,0.001099359,0.00125847,0.004583198,0.002135212,0.003280056,0.002874817,0.002035089,0.002754946],"category_scores_gemma":[0.04287613,0.0009120557,0.001867469,0.004203711,0.000888437,0.002415653,0.001987397,0.001954146,0.0008206485],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002332777,"about_ca_system_score_gemma":0.003799334,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.03612829,"about_ca_topic_score_gemma":0.03611812,"domain_scores_codex":[0.9921496,0.005059093,0.0003767393,0.001012156,0.001100839,0.0003015426],"domain_scores_gemma":[0.9742992,0.01899524,0.001492806,0.001772367,0.003008536,0.0004318613],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0006057512,0.0003097727,0.09730317,0.001098913,0.001608533,0.0003045575,0.005031742,0.4460824,0.0035302,0.07816671,0.008916475,0.3570418],"study_design_scores_gemma":[0.00003985811,0.0000744365,0.009379401,0.0001972577,0.0001088986,0.0001447139,0.0008026101,0.9623684,0.0007895668,0.02159571,0.0044377,0.00006146318],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.1245125,0.002287109,0.8657759,0.0009848208,0.0001099342,0.0005039776,0.001104644,0.0006492603,0.004071829],"genre_scores_gemma":[0.3817488,0.0009958998,0.6123202,0.0001840912,0.00006819565,0.0003783883,0.002068467,0.0002356148,0.002000388],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.03612829,"threshold_uncertainty_score":0.07183599,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0155571101798198,"score_gpt":0.3234207245779174,"score_spread":0.3078636143980976,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}