{"id":"W7164230544","doi":"10.5376/pgt.2025.16.0028","title":"Advances in Saikosaponin Biosynthetic Pathways and Gene Regulation in Bupleurum (Bupleurum chinense)","year":2025,"lang":"","type":"article","venue":"Plant Gene and Trait","topic":"Plant biochemistry and biosynthesis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Metabolic engineering; Metabolic pathway; Transcriptional regulation; Transcription factor; Regulation of gene expression; Gene; Triterpene; Mechanism (biology); Regulator gene","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004082243,0.0005057109,0.0005291864,0.0002482851,0.0001440478,0.0000686642,0.0002079115,0.000547001,0.00001450193],"category_scores_gemma":[0.0001050434,0.0005008181,0.00009010455,0.000321461,0.0002091753,0.00002252306,0.0001838111,0.0002506648,0.000001891924],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003222978,"about_ca_system_score_gemma":0.0001509329,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005230888,"about_ca_topic_score_gemma":0.0006058359,"domain_scores_codex":[0.997417,0.0001103543,0.0006586515,0.001044495,0.0001530352,0.000616469],"domain_scores_gemma":[0.9992386,0.00009859378,0.0001577244,0.000333111,0.00002901618,0.0001430037],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006360467,0.0002097464,0.0100529,0.0003209815,0.00005183949,0.00007715534,0.00007753145,0.00003345479,0.9602241,0.0002142649,0.00007604605,0.02802596],"study_design_scores_gemma":[0.00170683,0.0001816717,0.03516077,0.0004775405,0.00008198836,0.000236502,0.0001180438,0.001793074,0.9487647,0.0004838456,0.01032491,0.0006700743],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9673663,0.02835581,0.00008027886,0.0005895285,0.0001673255,0.0003390808,0.001364146,0.00001273392,0.00172475],"genre_scores_gemma":[0.9608885,0.03740594,0.0002596276,0.0001937574,0.000112894,0.00002236171,0.0008010906,0.00001961725,0.0002962062],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02735589,"threshold_uncertainty_score":0.9997444,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005471526229892557,"score_gpt":0.2014128460012569,"score_spread":0.1959413197713643,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}