{"id":"W72891104","doi":"10.1007/978-1-60327-575-0_6","title":"Receptor-DNA Interactions: EMSA and Footprinting","year":2009,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"Vancouver General Hospital; University of British Columbia","funders":"","keywords":"Footprinting; Computational biology; DNA footprinting; DNA; Transcription factor; DNA binding site; Biology; Promoter; HMG-box; Transcription (linguistics); DNA-binding protein; Gene; Genetics; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002972382,0.002566545,0.001599802,0.0021555,0.001604135,0.00109298,0.003048205,0.001532861,0.007775201],"category_scores_gemma":[0.001033174,0.002283934,0.001747885,0.002240593,0.001600272,0.0009662156,0.001118911,0.005645837,0.00944622],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001508802,"about_ca_system_score_gemma":0.0008548815,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002032349,"about_ca_topic_score_gemma":0.004655002,"domain_scores_codex":[0.9967791,0.001168133,0.0002420377,0.0006460313,0.0008884617,0.0002762477],"domain_scores_gemma":[0.9994478,0.0002309768,0.00007201057,0.0001316253,0.00006865153,0.00004908288],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001411504,0.000117167,0.0000770275,0.0008073441,0.00005052647,0.0001071248,0.000136919,0.000396948,0.9884419,0.001754724,0.001374772,0.006594389],"study_design_scores_gemma":[0.00005274239,0.0001504022,0.0009803234,0.00006676292,0.00003285426,0.0004155347,0.00006881916,0.001015294,0.9662928,0.0009304455,0.0299315,0.00006252529],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.12608,0.03476402,0.7883915,0.003923076,0.001115036,0.002848516,0.01234763,0.007887154,0.02264311],"genre_scores_gemma":[0.1843398,0.03656663,0.7253548,0.001209469,0.0002427249,0.005348149,0.01426896,0.001156562,0.03151292],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.007775201,"threshold_uncertainty_score":0.02601057,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01261212636457028,"score_gpt":0.3620947835997828,"score_spread":0.3494826572352125,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}