{"id":"W763178848","doi":"10.1371/journal.pone.0131972","title":"Genetic Variability of Bovine Viral Diarrhea Virus and Evidence for a Possible Genetic Bottleneck during Vertical Transmission in Persistently Infected Cattle","year":2015,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Animal Disease Management and Epidemiology","field":"Agricultural and Biological Sciences","cited_by":27,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Alberta Livestock and Meat Agency; University of Calgary","keywords":"Biology; Viral quasispecies; Virology; Virus; Pestivirus; Viral evolution; Transmission (telecommunications); Flaviviridae; Genetic variability; Cattle Diseases; Genetics; Viral disease; Genotype; Hepatitis C virus; Gene; Genome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006098744,0.0001465866,0.0003257484,0.000916711,0.0003996481,0.0005930165,0.0002595918,0.0003811007,0.0004685116],"category_scores_gemma":[0.001102897,0.0001704239,0.0001785935,0.0006000747,0.0004732129,0.0002500871,0.0002321576,0.0003718088,0.00009004927],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004237999,"about_ca_system_score_gemma":0.0001993235,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002868273,"about_ca_topic_score_gemma":0.002851696,"domain_scores_codex":[0.9995604,0.00009709667,0.0000301106,0.0001335326,0.0000849292,0.000093801],"domain_scores_gemma":[0.9991754,0.0002712343,0.0002685221,0.00004684733,0.0001044422,0.0001336037],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001483991,0.0001578423,0.6364002,0.0000640912,0.0001368614,0.0004820203,0.002483172,0.000399255,0.3499148,0.0002596444,0.00004526282,0.00817272],"study_design_scores_gemma":[0.00001300698,0.0003644366,0.9934662,0.00000998372,0.00003983397,0.0006571578,0.0005515278,0.0007518398,0.003847691,0.00008752746,0.0002027821,0.00000804183],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9997436,0.00004688237,0.0001162012,0.000002620073,5.004758e-7,0.000001476763,0.00002529515,7.048873e-7,0.0000626638],"genre_scores_gemma":[0.9996867,0.00003668394,0.0001298629,0.000006306396,0.00000192006,0.000002383178,0.00008986515,0.000001372617,0.00004490878],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002868273,"threshold_uncertainty_score":0.005703211,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1005889467394353,"score_gpt":0.2613613813475499,"score_spread":0.1607724346081147,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}