{"id":"W77265774","doi":"10.1007/978-1-62703-526-2_3","title":"Single-Molecule Resolution Fluorescent In Situ Hybridization (smFISH) in the Yeast S. cerevisiae","year":2013,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Gene Regulatory Network Analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"Canadian Institutes of Health Research","keywords":"In situ hybridization; Gene expression; Biology; RNA; Yeast; Cell biology; In situ; Context (archaeology); Molecular biology; DNA; Saccharomyces cerevisiae; Fluorescence in situ hybridization; Fluorescence; Computational biology; Cell; Gene; Single-cell analysis; Chemistry; Biochemistry; Chromosome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001525347,0.0002432721,0.0003146603,0.0002729946,0.00003505755,0.00003113071,0.0004390152,0.0003124787,0.000021777],"category_scores_gemma":[0.0003525102,0.000209441,0.0001315503,0.0007197984,0.0001326793,0.000006040912,0.0001725879,0.000232757,0.00001129474],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008078286,"about_ca_system_score_gemma":0.00004691055,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001663849,"about_ca_topic_score_gemma":0.0003689475,"domain_scores_codex":[0.9953555,0.002885551,0.0005272432,0.0006207437,0.0001171547,0.0004938492],"domain_scores_gemma":[0.9990515,0.00004100945,0.0001308498,0.0006591539,0.00006699256,0.00005046881],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001841168,0.0001216317,0.007938835,0.000009319718,0.00001891939,0.00001202479,0.00006112102,0.001347384,0.9785221,0.0002368099,0.0001554873,0.011558],"study_design_scores_gemma":[0.001184568,0.0003240152,0.02972457,0.00004680304,0.00003583782,0.00003706348,0.0002023666,0.003405461,0.9543759,0.003053755,0.007036224,0.0005733864],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7123233,0.00223794,0.2835267,0.0004775132,0.0001017182,0.0005380047,0.000002173137,0.000009271032,0.0007833818],"genre_scores_gemma":[0.9120056,0.0001301114,0.08676849,0.0006579444,0.0000845101,0.0001338905,0.0001633353,0.00003045085,0.00002567377],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1996823,"threshold_uncertainty_score":0.8540756,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01545470299179781,"score_gpt":0.3159296412762041,"score_spread":0.3004749382844063,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}