{"id":"W773790004","doi":"10.1139/o10-002","title":"QUASI analysis of host immune responses to Gag polyproteins of human immunodeficiency virus type 1 by a systematic bioinformatics approachThis paper is one of a selection of papers published in this special issue entitled “Second International Symposium on Recent Advances in Basic, Clinical, and Social Medicine” and has undergone the Journal's usual peer review process.","year":2010,"lang":"en","type":"article","venue":"Biochemistry and Cell Biology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; Genome British Columbia; University of Manitoba; Public Health Agency of Canada","funders":"Canadian Institutes of Health Research","keywords":"Group-specific antigen; CTL*; Biology; Immune system; Epitope; Virology; Virus; Immunology; Human leukocyte antigen; Antibody; Genetics; Antigen; CD8","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010734,0.0002892499,0.000597318,0.002076611,0.0004865308,0.0005456403,0.0002520538,0.0002505181,0.0004589501],"category_scores_gemma":[0.00211805,0.0001544043,0.001106217,0.00128075,0.0002350932,0.0002182556,0.0002930955,0.0002474876,0.000159956],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003675598,"about_ca_system_score_gemma":0.0009073785,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001724385,"about_ca_topic_score_gemma":0.003668716,"domain_scores_codex":[0.9994457,0.0002468234,0.0000518114,0.0001320349,0.00007959131,0.00004393555],"domain_scores_gemma":[0.9983391,0.001065281,0.000260739,0.00007983329,0.0001635873,0.00009142786],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.00244087,0.0007823461,0.5193343,0.001706317,0.002211679,0.0009276817,0.000702283,0.02273171,0.2835662,0.001733094,0.002101474,0.161762],"study_design_scores_gemma":[0.0002487387,0.002179376,0.5795935,0.0000935216,0.001578213,0.001702267,0.0008352821,0.3593016,0.04358625,0.003766788,0.007028407,0.00008614438],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9768648,0.0006660917,0.01940424,0.00009749268,0.00001136377,0.00007469066,0.002180232,0.0003229418,0.0003780833],"genre_scores_gemma":[0.9576579,0.0002034621,0.03465352,0.00008989518,0.00001243395,0.0000956296,0.007017859,0.00003503198,0.0002342435],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002076611,"threshold_uncertainty_score":0.005676806,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02308609989250647,"score_gpt":0.3169850452523699,"score_spread":0.2938989453598634,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}