{"id":"W7954114","doi":"10.1139/m94-127","title":"Genome Signatures Reveal the Importance of Context Dependent Codon Bias In A Range of Bacterial Genomes","year":2010,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Genome; Context (archaeology); Biology; Bacterial genome size; Range (aeronautics); Genetics; Evolutionary biology; Computational biology; Gene; Paleontology","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001298535,0.0001734074,0.00026394,0.0005084731,0.0002064522,0.0003575321,0.00009289082,0.0002610064,0.0006636992],"category_scores_gemma":[0.0005173387,0.0001732895,0.000134533,0.0004392706,0.0001526861,0.000174674,0.000196579,0.0003403758,0.0003106683],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001804174,"about_ca_system_score_gemma":0.0001704705,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007618331,"about_ca_topic_score_gemma":0.002218498,"domain_scores_codex":[0.9998428,0.00002630206,0.00001157277,0.00005297847,0.00003386812,0.00003248441],"domain_scores_gemma":[0.9995906,0.0001144182,0.0001462814,0.00003659927,0.00004995705,0.00006219753],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002427398,0.00001997926,0.01735816,0.00005756993,0.00002103862,0.0001912733,0.0001207386,0.0001620318,0.9768595,0.000177427,0.00003988688,0.00474976],"study_design_scores_gemma":[0.00003438447,0.0006125693,0.807618,0.00006827057,0.0001584351,0.00392452,0.0004690647,0.003956937,0.1754107,0.001155002,0.006538467,0.00005371128],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977255,0.0004009399,0.001004478,0.00002734688,0.000004304412,0.000005314059,0.0002663091,0.00002565906,0.0005402187],"genre_scores_gemma":[0.9971439,0.0001943339,0.0016001,0.00004330459,0.00000613162,0.000006530637,0.0006880279,0.00001899293,0.0002986265],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0007618331,"threshold_uncertainty_score":0.002220273,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01171367837895094,"score_gpt":0.2103131568480202,"score_spread":0.1985994784690693,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}