{"id":"W8008330","doi":"10.1007/978-1-60327-853-9_11","title":"Detection and Quantitative Assessment of Horizontal Gene Transfer","year":2009,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Canadian Institutes of Health Research","keywords":"Horizontal gene transfer; Prokaryote; Genome; Gene transfer; Gene; Computational biology; Biology; Horizontal and vertical; Genetics; Geography; Geodesy","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002213343,0.000624176,0.000834095,0.002346642,0.0003179204,0.001405854,0.0009778189,0.000817306,0.003221792],"category_scores_gemma":[0.004298243,0.0004355753,0.0004434934,0.001684509,0.0005638279,0.0009196781,0.000819378,0.0008770361,0.001415382],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005380943,"about_ca_system_score_gemma":0.0004059923,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008238315,"about_ca_topic_score_gemma":0.0008886288,"domain_scores_codex":[0.998073,0.0002633283,0.00007950207,0.0003423219,0.001134685,0.000107115],"domain_scores_gemma":[0.9979042,0.001070863,0.0002260545,0.0001952438,0.0005494709,0.00005419744],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002221818,0.0001475777,0.01807006,0.0009690372,0.0001239424,0.00007620199,0.0001900409,0.009810272,0.7557598,0.004407118,0.000970897,0.2092528],"study_design_scores_gemma":[0.00002342021,0.0004722915,0.04041226,0.0001661235,0.0001393113,0.0006544048,0.0003239024,0.1651924,0.7747132,0.007948877,0.009809401,0.0001444592],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.235705,0.007686073,0.7389091,0.0002927895,0.0002479362,0.0003116434,0.003029391,0.002402641,0.01141535],"genre_scores_gemma":[0.5337915,0.005190645,0.451516,0.0001301791,0.00005897932,0.0005306575,0.002357296,0.0002850255,0.006139603],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.003221792,"threshold_uncertainty_score":0.0117054,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02114416246159671,"score_gpt":0.3878680645956668,"score_spread":0.36672390213407,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}