{"id":"W811351131","doi":"10.1016/j.ympev.2015.06.010","title":"Concordant species delimitation from multiple independent evidence: A case study with the Pachytriton brevipes complex (Caudata: Salamandridae)","year":2015,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Species Distribution and Climate Change","field":"Environmental Science","cited_by":15,"is_retracted":false,"has_abstract":false,"ca_institutions":"Royal Ontario Museum","funders":"Chengdu Institute of Biology; Kunming Institute of Zoology, Chinese Academy of Sciences; Natural Sciences and Engineering Research Council of Canada; National Natural Science Foundation of China","keywords":"Biology; Salamandridae; Coalescent theory; Mitochondrial DNA; Evolutionary biology; Species complex; Vicariance; Biological dispersal; Ecology; Phylogenetics; Phylogenetic tree; Gene flow; Zoology; Phylogeography; Caudata; Genetics; Genetic variation; Gene; Population","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002459749,0.0001587377,0.0001345164,0.00001959283,0.0002102537,0.00009923551,0.0001282547,0.00004303498,0.0002470594],"category_scores_gemma":[0.00005623132,0.0001112192,0.00002914368,0.0001754091,0.0001980144,0.00008522119,0.0001776075,0.00008818063,0.00004793066],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002945008,"about_ca_system_score_gemma":0.00001571999,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003593136,"about_ca_topic_score_gemma":0.008969482,"domain_scores_codex":[0.9987173,0.0001507445,0.0001694751,0.0003244064,0.0004376171,0.0002004551],"domain_scores_gemma":[0.9993958,0.00005587573,0.00009486013,0.0002774612,0.00005186527,0.0001241726],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001740544,0.000351875,0.9114951,0.000008510133,0.0000660556,0.0006047763,0.002645499,0.001281729,0.07815292,0.0001705201,0.003753165,0.001295764],"study_design_scores_gemma":[0.001206262,0.000638632,0.9584092,0.00001104525,0.0001037553,0.0001933478,0.03347764,0.002268411,0.001025951,0.0001004754,0.002330062,0.0002351513],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9922644,0.0008485175,0.005667333,0.0003681319,0.00007368621,0.0005209885,0.00005152789,0.00001962324,0.0001858196],"genre_scores_gemma":[0.9994664,0.00006742834,0.0001724671,0.0001189912,0.00003378028,0.00003948352,0.00006524767,0.00001119096,0.00002496534],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07712696,"threshold_uncertainty_score":0.5431771,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06754995499525829,"score_gpt":0.2615808835031561,"score_spread":0.1940309285078978,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}