{"id":"W838157302","doi":"10.1371/journal.pgen.1005338","title":"Common Cell Shape Evolution of Two Nasopharyngeal Pathogens","year":2015,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":46,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"Agence Nationale de la Recherche","keywords":"Biology; Neisseria meningitidis; Peptidoglycan; Locus (genetics); Most recent common ancestor; Genetics; Gene; Commensalism; Genome; Immune system; Evolutionary biology; Microbiology; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007022418,0.00008812824,0.0001637747,0.0000509172,0.00004704294,0.000004638548,0.0000933323,0.0001110786,0.0002186976],"category_scores_gemma":[0.00001162221,0.00008166698,0.00004259172,0.00008302676,0.00004653057,0.00002417608,0.00005920209,0.00008733445,0.000219609],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002941836,"about_ca_system_score_gemma":0.00004941223,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003951404,"about_ca_topic_score_gemma":0.00003428552,"domain_scores_codex":[0.9994518,0.00008171237,0.0001887678,0.0001153457,0.0000141835,0.0001482383],"domain_scores_gemma":[0.9995693,0.00002291868,0.00007979175,0.0001846193,0.000120029,0.00002334075],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003302029,0.0002160213,0.02257632,0.00001055864,0.00003334232,3.348246e-7,0.0001127396,0.00002256103,0.9752901,0.0001577946,0.001006471,0.000540707],"study_design_scores_gemma":[0.001548592,0.0004388224,0.005284432,0.00001062457,0.00009738316,0.0000188525,0.00009246674,0.0002810233,0.9833119,0.0004493587,0.008322394,0.0001441776],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9943264,0.003338004,0.00002779344,0.00002600858,0.0007013583,0.0001022143,0.0000492316,0.00003332805,0.001395699],"genre_scores_gemma":[0.9994353,0.00003927216,0.0001297624,0.00001325148,0.00007774007,0.000005774918,0.00005004914,0.0000108646,0.0002379581],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01729189,"threshold_uncertainty_score":0.3330283,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03078065324314104,"score_gpt":0.2539927480910885,"score_spread":0.2232120948479474,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}