{"id":"W857020444","doi":"10.1371/journal.pone.0131039","title":"Genomic Scans of Zygotic Disequilibrium and Epistatic SNPs in HapMap Phase III Populations","year":2015,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Genetic Associations and Epidemiology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"","keywords":"International HapMap Project; Linkage disequilibrium; Epistasis; Genetics; Biology; Single-nucleotide polymorphism; Population; SNP; Tag SNP; Evolutionary biology; Gene; Genotype; Demography","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008790495,0.0001869689,0.0002088319,0.00070478,0.0003600262,0.0003336068,0.0001712215,0.0001753517,0.001949186],"category_scores_gemma":[0.002398563,0.0001297556,0.0004314373,0.0008939817,0.0002969158,0.0001251693,0.0003320616,0.000313372,0.000141769],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001690725,"about_ca_system_score_gemma":0.000161482,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003263605,"about_ca_topic_score_gemma":0.003543859,"domain_scores_codex":[0.9994763,0.0002561058,0.00001975275,0.0001691349,0.00003919914,0.0000395004],"domain_scores_gemma":[0.9991406,0.0004725625,0.000154521,0.00009913689,0.0000586187,0.00007453146],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00196147,0.00009177208,0.8063954,0.0001254157,0.001253025,0.0007341192,0.00212906,0.004016824,0.1409362,0.003310289,0.0007828999,0.03826351],"study_design_scores_gemma":[0.00002715082,0.0001299955,0.9934911,0.00000690114,0.0001124375,0.0002462048,0.0002582903,0.002188279,0.002337195,0.0005826932,0.0006082176,0.00001142907],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973225,0.00005793069,0.001955699,0.00001304487,0.000002138484,0.000007981444,0.0002120911,0.0000194725,0.0004091242],"genre_scores_gemma":[0.997396,0.0000346187,0.001974497,0.00002170196,0.000002553542,0.00001962292,0.0003821519,0.00001201786,0.0001567706],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003263605,"threshold_uncertainty_score":0.006520689,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08161907352316704,"score_gpt":0.2960176227505694,"score_spread":0.2143985492274023,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}