{"id":"W907485562","doi":"10.1128/9781555817732.ch26","title":"Second Chromosomes and Megaplasmids in Bacteria","year":2014,"lang":"en","type":"book-chapter","venue":"ASM Press eBooks","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"","keywords":"Replicon; Biology; Gene; Genetics; Circular bacterial chromosome; Genome; Chromosome; DNA replication; Bacterial genome size; DNA; Origin of replication; Plasmid","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001283692,0.0003336735,0.0004198005,0.00002061779,0.00006914152,0.00009843792,0.000282439,0.000442504,0.0009505589],"category_scores_gemma":[0.00001028687,0.0001436654,0.00009798494,0.000005686302,0.000128548,0.00003993644,0.0002052757,0.0002942038,0.00003986802],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002576315,"about_ca_system_score_gemma":0.000006853884,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000131661,"about_ca_topic_score_gemma":0.000865755,"domain_scores_codex":[0.9987154,0.00003571953,0.0002921418,0.0004991511,0.0001745302,0.000283036],"domain_scores_gemma":[0.9994364,0.000163397,0.0001499348,0.0001111142,0.00003114843,0.000107991],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001248947,0.00004583141,0.0004767559,0.0003123156,0.0003458902,0.0001241108,0.0005931099,4.187572e-8,0.5433947,0.2220685,0.01081486,0.2216989],"study_design_scores_gemma":[0.0002569178,0.0001834347,0.002540266,0.0002102073,0.00004108869,0.00002131009,0.000003522215,0.000002041572,0.02484367,0.005588886,0.9656438,0.0006648109],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"other","genre_gemma":"other","genre_scores_codex":[0.2550809,0.0003462905,3.608837e-8,0.00005436769,0.0001660526,0.0002655208,0.000151623,0.00007547505,0.7438597],"genre_scores_gemma":[0.291999,0.00002665943,0.00005057655,0.0002073967,0.000390579,0.00002901521,0.00008033338,0.000006924779,0.7072095],"genre_candidate":"other","genre_consensus":"other","teacher_disagreement_score":0.954829,"threshold_uncertainty_score":0.9999627,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01931454881408672,"score_gpt":0.1967049835010612,"score_spread":0.1773904346869745,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}