{"id":"W952988520","doi":"10.1016/j.protis.2015.07.003","title":"Marine Isolates of Trimastix marina Form a Plesiomorphic Deep-branching Lineage within Preaxostyla, Separate from Other Known Trimastigids (Paratrimastix n. gen.)","year":2015,"lang":"en","type":"article","venue":"Protist","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Biology; Paraphyly; Lineage (genetic); Phylogenetic tree; Phylogenetics; Sister group; Ceramiales; Evolutionary biology; Zoology; Botany; Algae; Gene; Clade; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004235096,0.0003664165,0.0004534856,0.00008910205,0.0001242478,0.00005826348,0.0004989714,0.000278342,0.0001190896],"category_scores_gemma":[0.0001953488,0.0003553676,0.0001706997,0.0002034377,0.0002072099,0.00002427089,0.0005216752,0.0002376152,0.00008948324],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000407551,"about_ca_system_score_gemma":0.000262345,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008745664,"about_ca_topic_score_gemma":0.0003154034,"domain_scores_codex":[0.9980946,0.0001276273,0.0005167562,0.0006042741,0.0002414633,0.0004152881],"domain_scores_gemma":[0.9986055,0.00003622097,0.00033511,0.0005453024,0.000212765,0.0002650274],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.009237305,0.001308818,0.403777,0.0004995059,0.001101139,0.0001044277,0.002274755,0.00141653,0.5643516,0.0008874576,0.006114274,0.008927129],"study_design_scores_gemma":[0.01145863,0.003172006,0.03598443,0.0001690204,0.0003761874,0.0001137792,0.0002654225,0.005542332,0.9082933,0.003233709,0.02964748,0.001743675],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.980301,0.001505688,0.01186939,0.00006143187,0.0003088039,0.001214726,0.000398886,0.00004866894,0.004291431],"genre_scores_gemma":[0.9863225,0.00004041748,0.01078844,0.0001168477,0.0003950128,0.0000752056,0.0005713971,0.00005242013,0.001637749],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3677926,"threshold_uncertainty_score":0.9998899,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02354590546497642,"score_gpt":0.2448607218627735,"score_spread":0.2213148163977971,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}