fMRIPrep: a robust preprocessing pipeline for functional MRI
2018· article· en· Nature Methods· Neuroscience
affno abstract
4,204
citations
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A standard protocol for describing individual-based and agent-based models
2006· article· en· Ecological Modelling· Environmental Science
affno abstract
2,964
citations
The Community Earth System Model: A Framework for Collaborative Research
2013· article· en· Bulletin of the American Meteorological Society· Environmental Science
aff
2,821
citations
Artificial intelligence in cancer imaging: Clinical challenges and applications
2019· review· en· CA A Cancer Journal for Clinicians· Medicine
afffund
1,829
citations
Variability in the analysis of a single neuroimaging dataset by many teams
2020· article· en· Nature· Neuroscience
afffundno abstract
1,194
citations
<scp>SciMAT</scp>: A new science mapping analysis software tool
2012· article· en· Journal of the American Society for Information Science and Technology· Decision Sciences
fundno aff
1,187
citations
BioMart – biological queries made easy
2009· article· en· BMC Genomics· Biochemistry, Genetics and Molecular Biology
afffund
1,174
citations
Visualization in Bayesian Workflow
2019· article· en· Journal of the Royal Statistical Society Series A (Statistics in Society)· Computer Science
aff
1,128
citations
The BioGRID interaction database: 2013 update
2012· article· en· Nucleic Acids Research· Biochemistry, Genetics and Molecular Biology
afffund
1,031
citations
miRNet 2.0: network-based visual analytics for miRNA functional analysis and systems biology
2020· article· en· Nucleic Acids Research· Biochemistry, Genetics and Molecular Biology
afffund
912
citations
MetaboAnalystR: an R package for flexible and reproducible analysis of metabolomics data
2018· article· en· Bioinformatics· Biochemistry, Genetics and Molecular Biology
afffund
802
citations
Data-analysis strategies for image-based cell profiling
2017· article· en· Nature Methods· Biochemistry, Genetics and Molecular Biology
aff
790
citations
HyPhy 2.5—A Customizable Platform for Evolutionary Hypothesis Testing Using Phylogenies
2019· article· en· Molecular Biology and Evolution· Biochemistry, Genetics and Molecular Biology
aff
776
citations
An introduction to the wound healing assay using live-cell microscopy
2014· article· en· Cell Adhesion & Migration· Biochemistry, Genetics and Molecular Biology
afffund
734
citations
Microbiome Helper: a Custom and Streamlined Workflow for Microbiome Research
2017· article· en· mSystems· Biochemistry, Genetics and Molecular Biology
afffund
711
citations
Mapping Local Climate Zones for a Worldwide Database of the Form and Function of Cities
2015· article· en· ISPRS International Journal of Geo-Information· Environmental Science
aff
696
citations
DIA-Umpire: comprehensive computational framework for data-independent acquisition proteomics
2015· article· en· Nature Methods· Chemistry
afffundno abstract
695
citations
pavo: an R package for the analysis, visualization and organization of spectral data
2013· article· en· Methods in Ecology and Evolution· Environmental Science
aff
689
citations
CAT – A Computational Anatomy Toolbox for the Analysis of Structural MRI Data
2022· preprint· en· bioRxiv (Cold Spring Harbor Laboratory)· Medicine
fundno aff
626
citations
MetaboAnalystR 3.0: Toward an Optimized Workflow for Global Metabolomics
2020· article· en· Metabolites· Biochemistry, Genetics and Molecular Biology
aff
588
citations
taxize: taxonomic search and retrieval in R
2013· article· en· F1000Research· Environmental Science
aff
564
citations
Human Disease Ontology 2018 update: classification, content and workflow expansion
2018· article· en· Nucleic Acids Research· Biochemistry, Genetics and Molecular Biology
aff
557
citations
The report of Task Group 100 of the AAPM: Application of risk analysis methods to radiation therapy quality management
2016· article· en· Medical Physics· Physics and Astronomy
aff
532
citations
Chatbot for Health Care and Oncology Applications Using Artificial Intelligence and Machine Learning: Systematic Review
2021· review· en· JMIR Cancer· Medicine
afffundvenue
528
citations
ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
2017· article· en· The Plant Cell· Agricultural and Biological Sciences
aff
515
citations