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Record W1973408460 · doi:10.1038/nbt.2491

Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement

2013· article· en· W1973408460 on OpenAlexafffund
Rajeev K. Varshney, Chi Song, Rachit K. Saxena, Sarwar Azam, Yu Sheng, Andrew Sharpe, Steven B. Cannon, Jong‐Min Baek, Benjamin D. Rosen, Bunyamin Tar’an, Teresa Millán, Xudong Zhang, Larissa Ramsay, Aiko Iwata‐Otsubo, Ying Wang, William M. Nelson, Andrew Farmer, Pooran M. Gaur, Carol Soderlund, R. Varma Penmetsa, Chunyan Xu, Arvind K. Bharti, Weiming He, Peter Winter, Shancen Zhao, James K. Hane, Noelia Carrasquilla‐Garcia, Janet Condie, Hari D. Upadhyaya, Ming‐Cheng Luo, Mahendar Thudi, C. L. L. Gowda, Narendra Pratap Singh, Judith Lichtenzveig, Krishna Kishore Gali, J. Rubio, N. Nadarajan, Jaroslav Doležel, K. C. Bansal, Xun Xu, David Edwards, Gengyun Zhang, Guenter Kahl, J. Gil, Karam B. Singh, Swapan K. Datta, Scott A. Jackson, Jun Wang, Douglas R. Cook

Bibliographic record

VenueNature Biotechnology · 2013
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicGenetic and Environmental Crop Studies
Canadian institutionsUniversity of SaskatchewanNational Research Council Canada
FundersUniversidad de CórdobaRural Development AdministrationConsortium of International Agricultural Research CentersSaskatchewan Pulse GrowersIndian Council of Agricultural ResearchU.S. Department of AgricultureMinistry of Agriculture - SaskatchewanEuropean Regional Development FundNational Institute of Food and AgricultureInstituto Nacional de Investigación y Tecnología Agraria y AlimentariaNational Science Foundation
KeywordsBiologyCropDomesticationBiotechnologyWhole genome sequencingPlant disease resistanceTraitGenomeGenetic resourcesGenetic diversityAgronomyGeneticsGenePopulation

Abstract

fetched live from OpenAlex

Chickpea (Cicer arietinum) is the second most widely grown legume crop after soybean, accounting for a substantial proportion of human dietary nitrogen intake and playing a crucial role in food security in developing countries. We report the ∼738-Mb draft whole genome shotgun sequence of CDC Frontier, a kabuli chickpea variety, which contains an estimated 28,269 genes. Resequencing and analysis of 90 cultivated and wild genotypes from ten countries identifies targets of both breeding-associated genetic sweeps and breeding-associated balancing selection. Candidate genes for disease resistance and agronomic traits are highlighted, including traits that distinguish the two main market classes of cultivated chickpea--desi and kabuli. These data comprise a resource for chickpea improvement through molecular breeding and provide insights into both genome diversity and domestication.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.010
Threshold uncertainty score0.021

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.002
Science and technology studies0.0010.000
Scholarly communication0.0010.000
Open science0.0000.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0040.004

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.010
GPT teacher head0.200
Teacher spread0.190 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1,271
Published2013
Admission routes2
Has abstractyes

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