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Record W1991761325 · doi:10.1002/cyto.b.21036

Issue Highlights—September 2012

2012· article· en· W1991761325 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

aboutThe title or abstract carries a Canadian signal from the geographic lexicon.
no affNo Canadian affiliation: this work is invisible to an affiliation-only frame.
No Canadian affiliation. An affiliation-only frame, the usual design, would never have seen this work. It is one of the works that make the case for inverting the frame.

Bibliographic record

VenueCytometry Part B Clinical Cytometry · 2012
Typearticle
Languageen
FieldMedicine
TopicAcute Myeloid Leukemia Research
Canadian institutionsnot available
Fundersnot available
KeywordsPolitical science

Abstract

fetched live from OpenAlex

In this issue, in addition to the exciting review article by Dr. Thomas Spitzer and colleagues that was highlighted by both the Editor-in-Chief and Dr. H. Lazarus, there are four articles focused on how flow cytometry (FC) can improve treating patients with leukemia and lymphoma. They include a Brief Communication about a novel flow cytometric assay to verify liposomal cytarabine treatment of lymphoma beyond the blood–brain barrier. There are three original articles describing new FC-based methods for chemotherapy efficacy assessments. One describes monitoring mitoxantrone efflux in acute myeloid leukemia (AML). Myeloid nuclear differentiation antigen (MNDA) expression in a large patient population using FC is described in the second original article. The third describes a sensitive technique to detect leukemia and lymphoma in bronchoalveolar lavage specimens. This issue also features two original articles dealing with new multiparametric automated immunophenotyping software. The introduction of automated software in clinical cytometry has been relatively slow. Automated standardized performance evaluation with multivariate classification would go a long way to assure consistent quality data generation in clinical immunology. It is encouraging to see software experts take on two tedious FC-based protocols to make such assays more reliable, reproducible. Although these two articles are promising in the simplicity, reliability, speed and objectivity of their approaches, it is difficult to say how soon they will be integrated into routine clinical application. Both software systems were developed for commercial distribution and rely on a newly patented technology utilizing probability state modeling (PSM) (1, 2). Central nervous system (CNS) is known to be a sanctuary for leukemic cells as cytostatic drugs usually ineffective at crossing the blood–brain barrier. Oncological patients at high risk of CNS complications are frequently administered cytarabine (DepoCytes™) intrathecally. In this issue, Stacchini et al. [(3); this issue, page 280] report a study where cytarabine is administered in encapsulated in spherical liposomal formulation of 3–30 microns. This method has the advantage of delivering the cytarabine where it is required and prolonging its half-life. Until now, the liposomes containing cytarabine were undetected in cerebrospinal fluid (CSF) specimens. This occurred because the cytospin staining procedure includes washing with alcohol, which dissolves all remaining liposome spherules. It is possible to identify residual liposomes in CSF with standard dual light scatter plot. Thanks to the introduction of flow cytometric analysis of CFS to identify neoplastic involvement, an additional issue is resolved. This discovery also requires that clinicians be warned of the possibility of falsely elevated leukocyte absolute counts with some automated cell counters in CFS of patents receiving DepoCyte™ liposomes, as the spherules may look similar to leukocytes. An article by Kim et al. [(4); this issue, page 283] entitled: “flow cytometry-based assessment of mitoxantrone efflux from leukemic blast varies with response to induction chemotherapy in acute myeloid leukemia” deals with a FC-based assay that has some predictive value. It alerts physicians to possible chemotherapeutic drug resistance during treatment of AML. The assay measures median fluorescent intensity of AML blast using mitoxantone with and without cyclosporine A incubation, an inhibitor of ABC transporter. The new assay is broad in range and thus covers most of the ABC transporter-related therapy failures. The authors outline the universal nature of their approach as compared to the limited practical value of ABC transporter dysfunction detection using gene-product-specific functional assays. They suggest that such quick assay should be included in the work-up on all newly diagnosed AML patients. The MFRI-based FC test could be useful for selecting therapy options for individuals where toxicity of induction chemotherapy is predictable. Such intervention will avoid chemotherapy that will turn out to be refractory (3, 4). MNDA is expressed at the highest levels in mature granulocytes and monocytes. It is believed that the MNDA expression is lower in patients with myelodysplastic syndromes (MDS) (5). In this issue, Bellos et al. [(8); this issue, page 295] explored this possibility in the article with title: “evaluation of flow cytometric assessment of myeloid nuclear differentiation antigen (MNDA) expression as a diagnostic marker for myelodysplastic syndromes in a series of 269 patients.” The authors set out to answer a clinically relevant question. Can MNDA expression in bone marrow (BM) cells help with a more reliable assessment of dyspoiesis? The answer is not absolutely clear while the addition of FC data increased the rate of correct identification by 13% and it also increased false-positive diagnosis by 14%. It is clear from this report that more similarly meticulous and comprehensive studies are required to fine-tune future MDS panel(s). There is continued interest to improve assay sensitivity to detect hematolymphoid neoplasms (HNL). For almost a decade, it has been know that FC exceeds the sensitivity of cytomorphology (CM) to detect HNL (6). It is less known how effective FC is with specimens obtained with the frequently used bronchoalverol lavage technique. Song et al. [(10); this issue, page 305] communicate their results in this issue with the title: “flow cytometry increases sensitivity of detection of leukemia and lymphoma cells in bronchoalveor lavage specimens.” The premise was that FC is more sensitive at detecting disease in blood specimens; perhaps, it will also do the same with other body fluids. They conclude that FC is more sensitive method when compared to CM. However, when combining FC and CM, a dual method has superior sensitivity that exceeds either assay when used alone. The first ISHAGE protocol was published 14 years ago (7). It is exciting to see a new automated approach to stem cell analysis. This article is offering a PSM strategy using list mode data to replace traditional single platform gating protocol that does require considerable operator experience. “Beyond gating-,” is a concept introduced by Finn in 2009 (8). In 2010, Bagwell embraced this concept and pushed it to a practical plateau by introducing PSM (9). In this issue, Herbert et al. [(14); this issue, page 313] describe new automated software in: “Automated analysis of flow cytometric data for CD34+ stem cell enumeration using a probability state model.” The strategy is to catalog all events into four categories: (A) beads, (B) debris, (C) intact dead, and (D) intact viable stem cells. If an event does not fit in the above-mentioned PSM classification system, it remains an unclassified event. The authors define cell types with expression profiles. They collect list mode file data until at least 500 stem cells are detected or 7 min elapsed. The flow cytometer is adjusted to a low CD45 signal threshold and no threshold limitations for FSC. Herbert et al. claim that PSM provides reproducibility, objectivity, speed, and accuracy higher or at least as good as ISHAGE. The bulk of their analyzed data is from cord blood. The resulting concordance analysis is impressive. It will be interesting to guess how soon PSM analysis will be integrated into quality clinical laboratory management practices. In 2007, Richards et al. introduced a FC-based assay for the detection of glycosylphosphatidylinositol-deficient (GPI) clones in paroxysmal noctural hemoglobinuria (10). More recently, in 2010, Borowitz el al. published guidelines for this assay (11). Currently, a manually managed FC protocol is the standard method for GPI detection. It is clear that automated software driven analysis would simplify and speed-up a complex time-consuming assay. In this issue, Miller et al. [(17); this issue, page 319] have evaluated just such strategy in an article titled: “Automated analysis of GPI-deficient leukocytes flow cytometric data using GemStone™.” The premise is quite simple; all observed cells are classified into five possible categories. (B) normal myeloid, (C) GPI-deficient myeloid, (D) normal monocyte, (E) GPI-deficient monocyte, and (A) all remaining unclassified cells. The four classified cell categories are based on the presence of markers: CD15, CD45, CD64, SSC, FLAER, and CD24. Based on expression levels of the above-mentioned surface, markers are further subdivided into C, D and E categories. Final assignment to the four categories of cells is based on stochastic variability calculations (9). A side-by-side automated versus manual gated (predicate method) evaluation was conducted using over 500 samples with 10% having GPI-deficient lymphocytes. The results were highly correlated. This automated software strategy looks promising. Readers of the Journal may also access an exciting online link to a video provided by these authors that demonstrate the PSM software in action analyzing a PNH case. Additionally, the data file used for this analysis may also be downloaded from the article's Supporting Information on the Wiley Online Library website. Available at www.wileyonlinelibrary. com Noted in the journal's previous issue were the abstracts from the International School on Practical Cytometry (ISPC) workshop (18). The second ISPC was held in Moscow from August 26–30 in 2011. It was organized under the auspices of the Russian Scientific Hematology Center, and the Russian Academy of Medical Sciences. ISPC was established in 2009 to provide every 2 years a comprehensive overview of technologies and applications of flow and imaging cytometry and a forum to encourage stimulating and practical discussions. The workshop had about 60 registered scientists from Russia and other Commonwealth of Independent States (CIS) countries. The ISPC workshop covered a wide selection of state-of-the-art lectures and seminars with invited speakers who are internationally recognized. About half of the faculty was from the USA. Dr. Lieberman (Boston) delivered the keynote lecture. She presented an up-to-date account on how cytotoxic cells are effective as killer cells. There were 22 lectures covering a spectacular variety of topics all related to cytometry. The lectures included both commercial and academic presentations. Speakers from the Boston area represented about half of the US academic delegation. Beside the keynote address, Dr. Barteneva gave two seminal presentations. Dr. Ponomarev covered a relatively new application for cytometry, microRNA (miRNA) studies and Dr. Preffer provided a contemporary perspective on leukemia and lymphoma diagnostics. There were two speakers from multilingual countries: Drs. Volvokov and Faster-Kan from Canada and Switzerland, respectively. The balance of the speakers was mostly from Moscow. There were 11 posters displayed. The 2011 poster award winner was A. Yakimenko from Hematology Corp. Inc., Moscow with “Analysis of the proaggregation capabilities of activated thrombocytes from different populations”. The overall scientific standard throughout the workshop was extremely high. These abstracts may be viewed in www.wileyonlinelibrary.com; in volume 82B, number 4, 2012 [DOI: 10.1002/cyto.b.21021] pages o1–o17.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.005
metaresearch head score (Gemma)0.004
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow), Research integrity, Insufficient payload (model declined to judge)
Consensus categoriesInsufficient payload (model declined to judge)
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.221
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0050.004
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0020.001
Bibliometrics0.0010.005
Science and technology studies0.0000.001
Scholarly communication0.0000.001
Open science0.0010.001
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0210.055

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.089
GPT teacher head0.428
Teacher spread0.339 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it