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Record W1999541735 · doi:10.1002/biot.201400842

Editorial: Methods and Advances – Biotech progress for science and our daily lives

2015· editorial· en· W1999541735 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueBiotechnology Journal · 2015
Typeeditorial
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicMicrobial Metabolic Engineering and Bioproduction
Canadian institutionsKootenay Association for Science & Technology
Fundersnot available
KeywordsBiotechnologySynthetic biologyBiochemical engineeringBiofuelBusinessEngineeringBiologyComputational biology

Abstract

fetched live from OpenAlex

Sang Yup Lee and Alois Jungbauer Biotechnology Journal provides a broad range of topics in biotechnology and is a forum to communicate activities towards a bio-based economy as well as general progress in biotechnology. In this issue, you see a huge variety of topics, methods and advances, which will influence future developments in the field. This Special issue starts with an article by Lusk et al. [1] giving insights to which extent biotech food is accepted by the public. While genetically modified food are still waiting to receive public acceptance, also life stock can be genetically modified [2]. More accepted is the biotech progress on biofuels and chemical production, i.e., processing raw materials, generating completely new chemical reactions [3], as well as economically viable and environmentally sustainable processes. One example is the production of biodiesel, where lipase is used for the transesterification reaction between fatty acids and short-chain alcohol. Methanol has most often been used as a substrate because it is cheap, but at the same time responsible for inactivation of lipase. Lotti and colleagues [4] review the mechanisms behind methanol inactivation of lipases and case studies on solving inactivation problems by protein and process engineering. Due to the versatile catalytic abilities, lipases also have many more applications, which makes cost effective production of lipases with a high activity and stability an important issue. Tan and colleagues review various lipase purification techniques, both conventional and novel, that have been used for the purification of lipases of various sources [5]. Regarding production of chemicals, terpenoids are of great industrial interest for their use ranging from pharmaceuticals and nutraceuticals up to biofuels. Cankar and colleagues [6] report the use of the plant Nicotiana benthamiana for the production of sesquiterpenes. The key approach is the use of an RNAi technique to silence endogenous pathways for increased (+)-valencene production, which demonstrates the potential of plant metabolic engineering for the production of terpenes. Biotechnology Journal places special emphasis on new methodologies for bioprocessing. Biotechnology Journal places special emphasis on new methodologies for bioprocessing. Biocatalysis is at the interface of biology and chemistry, and the engine for industrial biotechnology. The natural pathways found in cells are the constraints to development of new reactions. The use of metabolic engineering to further improve reaction cascades has opened completely new possibilities for discovery in the field of biocatalysis. Dudley et al. [3] review recent developments in cell-free metabolic engineering to overcome certain limitations of microbial metabolic engineering, they give an impressive insight how synthetic biology and metabolic engineering contribute to further development in this field. Microbial metabolic engineering research [3] has been blossoming over the recent years towards the goal of establishing sustainable bio-based chemical industry. In addition to its value for optimizing biosynthetic pathways, one of the promising applications includes bioconversion to produce such products that cause cellular toxicity [3]. Miniaturization and nanotechnology have contributed to improved processes materials and therapies. Typical processes such as aqueous two-phase extraction can be performed in a very small scale in parallel fashion. You can find an interesting contribution in this issue by Frampton et al. [7], who have developed nanosystems for optimization of aqueous two-phase extraction. In the field of new materials, a lot of research work has been done for cultivation of stems cells [8], scaffold for tissue engineering etc. Human pluripotent stem cells have a great potential to be used as cell therapies and many other applications. Jenkins and Farid [8] review key process economic drivers for human pluripotent stem cells with respect to the economic and operational feasibility of the bioprocess. Various factors such as bioreactor technologies, medium development, microcarriers, optimal bioprocess operating conditions are discussed. Analytical biotechnology is a key topic for rapid progress in biotechnology. For genetic variation detection in a multiplexed mode, multiplex amplification of target DNA needs to be performed. Park and colleagues [9] review multiplex technologies based on universal probe amplification for detecting SNPs, in particular related to those responsible for human diseases [9]. Due to the undesirable widespread use of cephalosporin as additive in livestock feeding, it has become important to detect cephalosporin contamination in food. Tsang and colleagues [10] report the development of a cephalosporin detecting biosensor system, showing an improved fluorescence signal and rapid response. Adenosine and its receptors are of great clinical interest as it modulates many physiological processes. Bartzoka and colleagues [11] report the development of a simple and inexpensive method for detecting adenosine by using a transparent biostrip. For example for many pharmaceutical applications, the systematic investigation of glycans is important, and thus there has been great need for high-throughput method for their analyses [12]. Çelik and colleagues [12] present a glycan array platform based on surface patterning of engineered glycophages displaying unique carbohydrate epitopes. Rarely has an upcoming method generated such as level of enthusiasm and interest that is now associated with CRISPR/Cas-9, a simple and efficient genomic editing technique with great potential for advancing basic genetic research, biotechnology, and medicine. In addition to this system, there are a number of techniques that have been developed for genome engineering and gene expression control. Song and colleagues [13] review recent advances in the development of these techniques for use in bacteria. Also in coming years Biotechnology Journal continues to publish a Special issue on “Methods and Advances”. Methods are the key for innovations and new discoveries. This issue impressively demonstrates the advances in biotechnology and we can expect several impacts in our daily lives from environment to food, and form food to medicine. Prof. Sang Yup Lee Co-Editor-in-Chief, Biotechnology Journal Prof. Alois Jungbauer Co-Editor-in-Chief, Biotechnology Journal

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.003
metaresearch head score (Gemma)0.004
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow), Research integrity
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Editorial · Consensus signal: Editorial
Teacher disagreement score0.233
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0030.004
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0020.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.007
GPT teacher head0.326
Teacher spread0.318 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it