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Record W2003103335 · doi:10.1002/qsar.200390006

Modeling mode of action of industrial chemicals: Application using chemicals on Canada's Domestic Substances List (DSL)

2003· article· en· W2003103335 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.
aboutThe title or abstract carries a Canadian signal from the geographic lexicon.

Bibliographic record

VenueQSAR & Combinatorial Science · 2003
Typearticle
Languageen
FieldComputer Science
TopicComputational Drug Discovery Methods
Canadian institutionsEnvironment and Climate Change Canada
Fundersnot available
KeywordsMode of actionQuantum chemicalMode (computer interface)Organic chemicalsQuantitative structure–activity relationshipAction (physics)Biochemical engineeringComputer scienceChemistryChemical industryBiological systemMolecular descriptorData miningEnvironmental chemistryMachine learningOrganic chemistryMoleculeBiologyBiochemistryHuman–computer interaction

Abstract

fetched live from OpenAlex

Abstract Traditionally quantitative structure activity relationships (QSARs) are derived on the assumption that similar chemicals should behave in a toxicologically similar manner. The development of mechanistic models for acute toxicity requires the chemical classification to be based on similar mode of toxic action. Currently, the classification approaches used to predict the mode of toxic action are predominantly based on chemical fragments and, to a lesser extent, on their electronic properties. The discrete nature of the fragment‐based approach, however, yields a classification that does not consider the electronic features of the entire chemical that has “continuous character”. The present study is based on the assumption that chemicals with the same mode of toxic action should possess commonality in their steric and electronic structure. The COmmon REactivity PAtterns (COREPA) approach has been applied to define the global physical properties and quantum‐chemical descriptors best clustering chemicals according to their behavioural mode of action (MOA). The derived COREPA models for each mode were translated into decision trees and applied to screen the organic chemicals on Canada's Domestic Substances List (DSL) for their mode of toxic action.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: Simulation or modeling
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.224
Threshold uncertainty score0.983

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.002
Science and technology studies0.0000.000
Scholarly communication0.0000.001
Open science0.0010.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.056
GPT teacher head0.351
Teacher spread0.295 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it