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Record W2005475849 · doi:10.3732/ajb.1000104

“<i>Prototaxites</i> was not a taphonomic artifact”

2010· article· en· W2005475849 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

aboutThe title or abstract carries a Canadian signal from the geographic lexicon.
no affNo Canadian affiliation: this work is invisible to an affiliation-only frame.
No Canadian affiliation. An affiliation-only frame, the usual design, would never have seen this work. It is one of the works that make the case for inverting the frame.

Bibliographic record

VenueAmerican Journal of Botany · 2010
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicBryophyte Studies and Records
Canadian institutionsnot available
Fundersnot available
KeywordsTaphonomyBiologyPaleontologyNatural (archaeology)PaleozoicSlumpingGeology

Abstract

fetched live from OpenAlex

Prototaxites Dawson 1859 is an enigmatic Late Paleozoic cylindrical fossil that ranges in size up to 8.8 m long and 1.4 m in diameter, with most specimens showing concentric layering in transverse section. Its internal anatomy consists of 20–45 µm diameter tubes embedded within a weft of smaller septate tubes. After comparing mats created under carefully controlled laboratory conditions with a fragment of a Prototaxites specimen from Ontario and selected published literature, 3 proposed that Prototaxites represents mats of rolled-up liverworts intermixed with fungal and cyanobacterial associates, interpreting the large tubes as liverwort rhizoids and the smaller tubes as separate fungal components. Although creative, this hypothesis can be firmly rejected: (1) no natural taphonomic mechanism could account for such large and tightly rolled mats; (2) the internal anatomy of Prototaxites is a highly ordered fabric that bears no resemblance to the manufactured roll-ups illustrated in fig. 3A–C of 3. Our comments on anatomy that follow are based on observations of the globally extensive collection of Prototaxites specimens at the National Museum of Natural History, Washington, D.C. Natural production of tightly rolled mats of such size is beyond the range of plausibility. Their example of a rolled liverwort mat was made by hand, and they offered only vague reference to “wind, water, or gravity” for their natural formation. Everything from soft sediment slumping (1) to the common experience of seeing a tarp or tablecloth in the wind all indicate irregular folds should be expected from these processes, not a tight spiral. Small roll-ups are occasionally found in shallow-water cyanobacterial mats, but these structures are on the centimeter-scale and involve no more than a few loose and elliptical revolutions of a spiral (2). Furthermore, a larger Prototaxites specimen would have been more than 10000 kg if hydrated (and dry mats would have been too brittle to roll, except gingerly by hand). The hurricane-level force their movement would require would rip and fragment the mat before it could be rolled, as seen in the geologic record with rip-up clasts of microbial mats in storm deposits (1). Gravity could perhaps propagate an existing roll-up but could not provide for its initiation, and such a roll-up would have to be already far larger than could be accounted for by other processes before gravity would be sufficient to take over. A larger Prototaxites specimen would require a long and uninterrupted topographic gradient steep enough to maintain the mat rolling continuously for more than a kilometer—such an incline is inconsistent with the deposition of the coal horizon in which the New Brunswick specimen figured by Graham and colleagues (their online appendix S7) was found in situ. The onus is on the authors either to provide evidence that such massive roll-ups have occurred with some frequency in the geologic past (none exists to our knowledge) or provide flume or other laboratory experiments that demonstrate circumstances for their generation without direct human intervention. Putting aside how problematic their formation would be, the mat roll-up interpretation can be tested directly with several anatomical expectations that the hypothesis requires—and the roll-up interpretation fails these tests on all counts. (1) The large tubes interpreted by 3 as rhizoids should have no preferred orientation unless aligned during uprooting perpendicular to the long axis of the roll and tangential to the roll's surface. In reality, these tubes are consistently aligned along the long axis of the trunk, not perpendicular to it [see plates II, III, and V in Hueber, 2001]. (2) If a rolled mat, then the layering should form a single continuous spiral in transverse section. In reality, single increments form closed, concentric rings (online appendix S7 3). These concentric rings cannot form in a rolled mat. Furthermore, the rings consist of longitudinally oriented, slightly smaller diameter and more densely packed large tubes indicating a continuous tissue, rather than “resistant layers” as noted by 3. (3) The thickness of individual layers in a rolled mat should be limited by that of the original unrolled mat. However, the ring thickness in some Prototaxites specimens can be close to 2 cm—far greater than the 2.6 mm thick mats in 3. (4) If Prototaxites were a rolled mat, sediment particles adhering to the mat should have been entrained between the mat layers and additional sediment should have filled gaps between the layers after burial. On the contrary, well-preserved specimens of Prototaxites are sediment free and tightly packed with regularly oriented tubes from the center to the periphery. (5) If a rolled mat, no tube or other structure should pass from one layer through the next. However, structures called “medullary rays” (closely analogous to a wood ray) commonly do so (plate V in 4). The unitary construction of Prototaxites trunks is real and is evidence of a coherent tissue produced by a discrete organism.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.503
Threshold uncertainty score0.404

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.006
GPT teacher head0.199
Teacher spread0.193 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it