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Record W2005475849 · doi:10.3732/ajb.1000104

“<i>Prototaxites</i> was not a taphonomic artifact”

2010· article· en· W2005475849 on OpenAlexaboutno aff
C. Kevin Boyce, Carol L. Hotton

Bibliographic record

VenueAmerican Journal of Botany · 2010
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicBryophyte Studies and Records
Canadian institutionsnot available
Fundersnot available
KeywordsTaphonomyBiologyPaleontologyNatural (archaeology)PaleozoicSlumpingGeology

Abstract

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Prototaxites Dawson 1859 is an enigmatic Late Paleozoic cylindrical fossil that ranges in size up to 8.8 m long and 1.4 m in diameter, with most specimens showing concentric layering in transverse section. Its internal anatomy consists of 20–45 µm diameter tubes embedded within a weft of smaller septate tubes. After comparing mats created under carefully controlled laboratory conditions with a fragment of a Prototaxites specimen from Ontario and selected published literature, 3 proposed that Prototaxites represents mats of rolled-up liverworts intermixed with fungal and cyanobacterial associates, interpreting the large tubes as liverwort rhizoids and the smaller tubes as separate fungal components. Although creative, this hypothesis can be firmly rejected: (1) no natural taphonomic mechanism could account for such large and tightly rolled mats; (2) the internal anatomy of Prototaxites is a highly ordered fabric that bears no resemblance to the manufactured roll-ups illustrated in fig. 3A–C of 3. Our comments on anatomy that follow are based on observations of the globally extensive collection of Prototaxites specimens at the National Museum of Natural History, Washington, D.C. Natural production of tightly rolled mats of such size is beyond the range of plausibility. Their example of a rolled liverwort mat was made by hand, and they offered only vague reference to “wind, water, or gravity” for their natural formation. Everything from soft sediment slumping (1) to the common experience of seeing a tarp or tablecloth in the wind all indicate irregular folds should be expected from these processes, not a tight spiral. Small roll-ups are occasionally found in shallow-water cyanobacterial mats, but these structures are on the centimeter-scale and involve no more than a few loose and elliptical revolutions of a spiral (2). Furthermore, a larger Prototaxites specimen would have been more than 10000 kg if hydrated (and dry mats would have been too brittle to roll, except gingerly by hand). The hurricane-level force their movement would require would rip and fragment the mat before it could be rolled, as seen in the geologic record with rip-up clasts of microbial mats in storm deposits (1). Gravity could perhaps propagate an existing roll-up but could not provide for its initiation, and such a roll-up would have to be already far larger than could be accounted for by other processes before gravity would be sufficient to take over. A larger Prototaxites specimen would require a long and uninterrupted topographic gradient steep enough to maintain the mat rolling continuously for more than a kilometer—such an incline is inconsistent with the deposition of the coal horizon in which the New Brunswick specimen figured by Graham and colleagues (their online appendix S7) was found in situ. The onus is on the authors either to provide evidence that such massive roll-ups have occurred with some frequency in the geologic past (none exists to our knowledge) or provide flume or other laboratory experiments that demonstrate circumstances for their generation without direct human intervention. Putting aside how problematic their formation would be, the mat roll-up interpretation can be tested directly with several anatomical expectations that the hypothesis requires—and the roll-up interpretation fails these tests on all counts. (1) The large tubes interpreted by 3 as rhizoids should have no preferred orientation unless aligned during uprooting perpendicular to the long axis of the roll and tangential to the roll's surface. In reality, these tubes are consistently aligned along the long axis of the trunk, not perpendicular to it [see plates II, III, and V in Hueber, 2001]. (2) If a rolled mat, then the layering should form a single continuous spiral in transverse section. In reality, single increments form closed, concentric rings (online appendix S7 3). These concentric rings cannot form in a rolled mat. Furthermore, the rings consist of longitudinally oriented, slightly smaller diameter and more densely packed large tubes indicating a continuous tissue, rather than “resistant layers” as noted by 3. (3) The thickness of individual layers in a rolled mat should be limited by that of the original unrolled mat. However, the ring thickness in some Prototaxites specimens can be close to 2 cm—far greater than the 2.6 mm thick mats in 3. (4) If Prototaxites were a rolled mat, sediment particles adhering to the mat should have been entrained between the mat layers and additional sediment should have filled gaps between the layers after burial. On the contrary, well-preserved specimens of Prototaxites are sediment free and tightly packed with regularly oriented tubes from the center to the periphery. (5) If a rolled mat, no tube or other structure should pass from one layer through the next. However, structures called “medullary rays” (closely analogous to a wood ray) commonly do so (plate V in 4). The unitary construction of Prototaxites trunks is real and is evidence of a coherent tissue produced by a discrete organism.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.008
Threshold uncertainty score0.016

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.002
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0020.006
Scholarly communication0.0020.003
Open science0.0010.001
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0050.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.006
GPT teacher head0.199
Teacher spread0.193 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations16
Published2010
Admission routes1
Has abstractyes

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