Fragmentation of condensed-phase DNA components by hyperthermal<mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML" display="inline"><mml:msup><mml:mi mathvariant="normal">He</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:math>impact
Why this work is in the frame
A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.
Bibliographic record
Abstract
We have observed severe damage to films of DNA components (thymine, D-ribose, 2-deoxy-D-ribose, and thymidine) induced by $10\phantom{\rule{0.3em}{0ex}}\text{to}\phantom{\rule{0.3em}{0ex}}100\phantom{\rule{0.3em}{0ex}}\mathrm{eV}$ ${\mathrm{He}}^{+}$ ions $(2.5--25\phantom{\rule{0.3em}{0ex}}\mathrm{eV}∕\mathrm{amu})$. The damage is attributed to the kinetic and potential energies, as well as the chemical reactivity of the ${\mathrm{He}}^{+}$ projectiles. Hyperthermal ${\mathrm{He}}^{+}$ ion impact on these films results in the complete destruction of the molecules via fragmentation, and direct and indirect (secondary fragment) reactive scattering, all of which leads to the desorption of abundant cation and anion fragments. The chemical composition of the fragments is identified, and the fragmentation patterns are compared to those produced by ${\mathrm{Ar}}^{+}$ irradiation. While the lower mass of ${\mathrm{He}}^{+}$ ions causes less efficient desorption of very heavy fragments, several reactive collisions are also observed, including hydrogen abstraction by incident ${\mathrm{He}}^{+}$ from any of the molecules studied to yield desorbing $\mathrm{He}{\mathrm{H}}^{+}$. This process likely occurs via the formation of an intermediate molecular ion ${(\mathrm{He}\text{\ensuremath{-}}\mathrm{H}\text{\ensuremath{-}}R)}^{*+}$, which decays to $\mathrm{He}{\mathrm{H}}^{+}+{R}^{\ifmmode\bullet\else\textbullet\fi{}}$. Compared to ${\mathrm{Ar}}^{+}$, here a significant $(\ifmmode\times\else\texttimes\fi{}23)$ enhancement in ${\mathrm{H}}^{+}$ desorption is observed during ${\mathrm{He}}^{+}$ ion irradiation, which likely involves (a) the decay of the intermediate ${(\mathrm{He}\text{\ensuremath{-}}\mathrm{H}\text{\ensuremath{-}}R)}^{*+}$, or desorbing $\mathrm{He}{\mathrm{H}}^{+}$, and (b) Auger or quasiresonant excitations of C, N, or O atom centers (or C-H, N-H, or O-H bonds) by the incident ${\mathrm{He}}^{+}$ ion. The formation of several molecular cations, e.g., ${\mathrm{H}}_{3}{\mathrm{O}}^{+}$, also requires hydrogen abstraction from its parent or adjacent molecules by initial cation fragments prior to desorption.
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Full frame distilled prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.
Codex and Gemma teacher scores by category
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.000 |
| Meta-epidemiology (narrow) | 0.001 | 0.001 |
| Meta-epidemiology (broad) | 0.001 | 0.002 |
| Bibliometrics | 0.000 | 0.001 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.001 |
| Open science | 0.001 | 0.000 |
| Research integrity | 0.000 | 0.001 |
| Insufficient payload (model declined to judge) | 0.001 | 0.002 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it