Fragmentation of condensed-phase DNA components by hyperthermal<mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML" display="inline"><mml:msup><mml:mi mathvariant="normal">He</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:math>impact
Bibliographic record
Abstract
We have observed severe damage to films of DNA components (thymine, D-ribose, 2-deoxy-D-ribose, and thymidine) induced by $10\phantom{\rule{0.3em}{0ex}}\text{to}\phantom{\rule{0.3em}{0ex}}100\phantom{\rule{0.3em}{0ex}}\mathrm{eV}$ ${\mathrm{He}}^{+}$ ions $(2.5--25\phantom{\rule{0.3em}{0ex}}\mathrm{eV}∕\mathrm{amu})$. The damage is attributed to the kinetic and potential energies, as well as the chemical reactivity of the ${\mathrm{He}}^{+}$ projectiles. Hyperthermal ${\mathrm{He}}^{+}$ ion impact on these films results in the complete destruction of the molecules via fragmentation, and direct and indirect (secondary fragment) reactive scattering, all of which leads to the desorption of abundant cation and anion fragments. The chemical composition of the fragments is identified, and the fragmentation patterns are compared to those produced by ${\mathrm{Ar}}^{+}$ irradiation. While the lower mass of ${\mathrm{He}}^{+}$ ions causes less efficient desorption of very heavy fragments, several reactive collisions are also observed, including hydrogen abstraction by incident ${\mathrm{He}}^{+}$ from any of the molecules studied to yield desorbing $\mathrm{He}{\mathrm{H}}^{+}$. This process likely occurs via the formation of an intermediate molecular ion ${(\mathrm{He}\text{\ensuremath{-}}\mathrm{H}\text{\ensuremath{-}}R)}^{*+}$, which decays to $\mathrm{He}{\mathrm{H}}^{+}+{R}^{\ifmmode\bullet\else\textbullet\fi{}}$. Compared to ${\mathrm{Ar}}^{+}$, here a significant $(\ifmmode\times\else\texttimes\fi{}23)$ enhancement in ${\mathrm{H}}^{+}$ desorption is observed during ${\mathrm{He}}^{+}$ ion irradiation, which likely involves (a) the decay of the intermediate ${(\mathrm{He}\text{\ensuremath{-}}\mathrm{H}\text{\ensuremath{-}}R)}^{*+}$, or desorbing $\mathrm{He}{\mathrm{H}}^{+}$, and (b) Auger or quasiresonant excitations of C, N, or O atom centers (or C-H, N-H, or O-H bonds) by the incident ${\mathrm{He}}^{+}$ ion. The formation of several molecular cations, e.g., ${\mathrm{H}}_{3}{\mathrm{O}}^{+}$, also requires hydrogen abstraction from its parent or adjacent molecules by initial cation fragments prior to desorption.
Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.
How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.000 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.000 | 0.000 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.000 | 0.000 |
| Insufficient payload (model declined to judge) | 0.003 | 0.001 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".