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Record W2074846102 · doi:10.1038/ejhg.2013.131

Data sharing in large research consortia: experiences and recommendations from ENGAGE

2013· article· en· W2074846102 on OpenAlexaff
Isabelle Budin‐Ljøsne, Julia Isaeva, Bartha Maria Knoppers, Anne Marie Tassé, Huei-Yi Shen, Mark I. McCarthy, Jennifer R. Harris

Bibliographic record

VenueEuropean Journal of Human Genetics · 2013
Typearticle
Languageen
FieldComputer Science
TopicResearch Data Management Practices
Canadian institutionsMcGill University
FundersNorwegian Institute of Public HealthKarolinska InstitutetUniversity of OxfordVrije Universiteit AmsterdamWellcome TrustHelsingin Yliopisto
KeywordsData sharingGenetic dataSurvey data collectionData scienceKnowledge managementBusinessPublic relationsComputer sciencePolitical scienceMedicineEnvironmental healthAlternative medicine

Abstract

fetched live from OpenAlex

Data sharing is essential for the conduct of cutting-edge research and is increasingly required by funders concerned with maximising the scientific yield from research data collections. International research consortia are encouraged to share data intra-consortia, inter-consortia and with the wider scientific community. Little is reported regarding the factors that hinder or facilitate data sharing in these different situations. This paper provides results from a survey conducted in the European Network for Genetic and Genomic Epidemiology (ENGAGE) that collected information from its participating institutions about their data-sharing experiences. The questionnaire queried about potential hurdles to data sharing, concerns about data sharing, lessons learned and recommendations for future collaborations. Overall, the survey results reveal that data sharing functioned well in ENGAGE and highlight areas that posed the most frequent hurdles for data sharing. Further challenges arise for international data sharing beyond the consortium. These challenges are described and steps to help address these are outlined.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.305
metaresearch head score (Gemma)0.378
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch, Open science
Consensus categoriesMetaresearch
DomainCandidate signal: Reproducibility · Consensus signal: none
Study designCandidate signal: Qualitative · Consensus signal: Qualitative
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.993
Threshold uncertainty score0.857

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.3050.378
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.002
Bibliometrics0.0030.006
Science and technology studies0.0110.010
Scholarly communication0.0250.036
Open science0.0070.033
Research integrity0.0080.009
Insufficient payload (model declined to judge)0.0050.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.391
GPT teacher head0.453
Teacher spread0.062 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; the direct Gemma label and the distilled Codex classifier agree on what is shown here.

Study designQualitative
DomainReproducibility
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations66
Published2013
Admission routes1
Has abstractyes

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