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Record W2075849239 · doi:10.1109/ccece.2008.4564782

Side effect machines for sequence classification

2008· article· en· W2075849239 on OpenAlexafffundvenue
Daniel Ashlock, Elizabeth Warner

Bibliographic record

VenueConference proceedings - Canadian Conference on Electrical and Computer Engineering · 2008
Typearticle
Languageen
FieldComputer Science
TopicAlgorithms and Data Compression
Canadian institutionsUniversity of Guelph
FundersUniversity of Guelph
KeywordsRandomnessComputer scienceFinite-state machineCluster analysisFeature (linguistics)Artificial intelligenceState (computer science)AlgorithmPopulationBounded functionSet (abstract data type)Sequence (biology)Machine learningMathematics

Abstract

fetched live from OpenAlex

Finite state machines are routinely used to efficiently recognize patterns in strings. The internal state structure of the machine is typically only of peripheral interest, appearing in algorithms only when the number of states is minimized in the interests of efficiency of execution or comparison. A side effect machine saves information about the internal transitions of the state machine. This record of internal state transitions forms an induced feature set for the string run through the machine. In this study the number of times a machine passes though each state is used as a numerical feature set for classification. Finite state machines are trained with an evolutionary algorithm to produce feature sets that are very easy for an unsupervised learning algorithm, k-means clustering, to learn. The system is demonstrated on a collection of synthetic DNA sequences with bounded randomness. The parameters, number of states, population size, and mutation rates, are explored to characterize their effect on performance. The machines achieve perfect classification on easy examples and good classification on more difficult examples. Parameter choice has a substantial impact on performance.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.007
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.010
Threshold uncertainty score0.032

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.007
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0020.002
Science and technology studies0.0010.001
Scholarly communication0.0020.002
Open science0.0010.001
Research integrity0.0010.003
Insufficient payload (model declined to judge)0.0100.006

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.034
GPT teacher head0.232
Teacher spread0.198 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations15
Published2008
Admission routes3
Has abstractyes

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