Interaction of Human Complement with Sbi, a Staphylococcal Immunoglobulin-binding Protein
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Bibliographic record
Abstract
Staphylococcal immunoglobulin-binding protein, Sbi, is a 436-residue protein produced by many strains of Staphylococcus aureus. It was previously characterized as being cell surface-associated and having binding capacity for human IgG and β2-glycoprotein I. Here we show using small angle x-ray scattering that the proposed extracellular region of Sbi (Sbi-E) is an elongated molecule consisting of four globular domains, two immunoglobulin-binding domains (I and II) and two novel domains (III and IV). We further show that together domains III and IV (Sbi-III-IV), as well as domain IV on its own (Sbi-IV), bind complement component C3 via contacts involving both the C3dg fragment and the C3a anaphylatoxin domain. Preincubation of human serum with either Sbi-E or Sbi-III-IV is inhibitory to all complement pathways, whereas domain IV specifically inhibits the alternative pathway. Monitoring C3 activation in serum incubated with Sbi fragments reveals that Sbi-E and Sbi-III-IV both activate the alternative pathway, leading to consumption of C3. By contrast, inhibition of this pathway by Sbi-IV does not involve C3 consumption. The observation that Sbi-E activates the alternative pathway is counterintuitive to intact Sbi being cell wall-associated, as recruiting complement to the surface of S. aureus would be deleterious to the bacterium. Upon re-examination of this issue, we found that Sbi was not associated with the cell wall fraction, but rather was found in the growth medium, consistent with it being an excreted protein. As such, our data suggest that Sbi helps mediate bacterial evasion of complement via a novel mechanism, namely futile fluid-phase consumption. Staphylococcal immunoglobulin-binding protein, Sbi, is a 436-residue protein produced by many strains of Staphylococcus aureus. It was previously characterized as being cell surface-associated and having binding capacity for human IgG and β2-glycoprotein I. Here we show using small angle x-ray scattering that the proposed extracellular region of Sbi (Sbi-E) is an elongated molecule consisting of four globular domains, two immunoglobulin-binding domains (I and II) and two novel domains (III and IV). We further show that together domains III and IV (Sbi-III-IV), as well as domain IV on its own (Sbi-IV), bind complement component C3 via contacts involving both the C3dg fragment and the C3a anaphylatoxin domain. Preincubation of human serum with either Sbi-E or Sbi-III-IV is inhibitory to all complement pathways, whereas domain IV specifically inhibits the alternative pathway. Monitoring C3 activation in serum incubated with Sbi fragments reveals that Sbi-E and Sbi-III-IV both activate the alternative pathway, leading to consumption of C3. By contrast, inhibition of this pathway by Sbi-IV does not involve C3 consumption. The observation that Sbi-E activates the alternative pathway is counterintuitive to intact Sbi being cell wall-associated, as recruiting complement to the surface of S. aureus would be deleterious to the bacterium. Upon re-examination of this issue, we found that Sbi was not associated with the cell wall fraction, but rather was found in the growth medium, consistent with it being an excreted protein. As such, our data suggest that Sbi helps mediate bacterial evasion of complement via a novel mechanism, namely futile fluid-phase consumption. The human pathogen Staphylococcus aureus produces an arsenal of virulence factors that aid the organism in effectively evading the immune system of the host. The ability of S. aureus to evade the adaptive immune response of the host has long been recognized (1Foster T.J. Nat. Rev. Microbiol. 2005; 3: 948-958Crossref PubMed Scopus (887) Google Scholar). Staphylococcal cell wall-associated protein A (SpA), 7The abbreviations used are: SpA, Staphylococcus protein A; Sbi, Staphylococcus aureus binder of immunoglobulin; Efb, extracellular fibrinogen-binding molecule; SAXS, small angle x-ray scattering; CP, classical pathway; MBLP, mannose-binding lectin pathway; AP, alternative pathway; RU, response units; CR, complement receptor; MALDI-TOF, matrix-assisted laser desorption ionization time-of-flight; SPR, surface plasmon resonance; NHS, N-hydroxysuccinimide; β2-GPI, β2-glycoprotein I. for instance, binds immunoglobulin G Fc fragment, and it interacts with certain Fab fragments, thus characterizing SpA as a B-cell superantigen (2Sasso E.H. Silverman G.J. Mannik M. J. Immunol. 1991; 147: 1877-1883PubMed Google Scholar, 3Silverman G.J. Goodyear C.S. Siegel D.L. Transfusion (Bethesda). 2005; 45: 274-280Crossref PubMed Scopus (43) Google Scholar). The Fc binding capacity of SpA has also been found to counteract the innate immune defenses of the host by interfering with the activation of the classical pathway of the complement system (4Goward C.R. Scawen M.D. Murphy J.P. Atkinson T. Trends Biochem. Sci. 1993; 18: 136-140Abstract Full Text PDF PubMed Scopus (52) Google Scholar). More recently a group of small excreted proteins has been discovered that also aid S. aureus in evading complement-mediated bacterial clearance (5Lee L.Y. Liang X. Hook M. Brown E.L. J. Biol. Chem. 2004; 279: 50710-50716Abstract Full Text Full Text PDF PubMed Scopus (103) Google Scholar, 6de Haas C.J. Veldkamp K.E. Peschel A. Weerkamp F. Van Wamel W.J. Heezius E.C. Poppelier M.J. Van Kessel K.P. van Strijp J. 2004; PubMed Scopus Google Scholar, M. A. van Wamel W.J. van Kessel K.P. van Strijp Nat. Immunol. 2005; PubMed Scopus Google Scholar, I. T. J. Immunol. 2005; PubMed Scopus Google Scholar). The of evasion and the of the of of not to a of in the of bacterial but is also the in as to SpA, a immunoglobulin-binding protein, Sbi, has been J. M. PubMed Scopus Google that in many S. aureus strains and Sbi is a protein that immunoglobulin-binding domain and a immunoglobulin-binding both with to the immunoglobulin-binding and of SpA but to it was that the immunoglobulin-binding of Sbi is a domain and in to SpA, Sbi interacts with the IgG Fc fragment van Immunol. Scopus Google Scholar). SpA, Sbi the cell wall but it does a cell J. M. PubMed Scopus Google Scholar). It has further been that Sbi is associated with the bacterial surface J. M. PubMed Scopus Google Scholar). Sbi has been to bind protein β2-glycoprotein a protein that has been in M. PubMed Scopus Google Scholar, van A. M.J. J. J. 18: PubMed Scopus Google Scholar). Here we the extracellular domain of Sbi, the of the domains, and the for in the evasion of both adaptive and innate immune in by S. aureus. the of the domains in we and the proposed extracellular of Sbi, to the cell region J. M. PubMed Scopus Google a and and the fragment to small angle x-ray scattering a well to in Scopus Google Scholar). on the we Sbi fragments, the region of the protein and as in and serum proteins that with Sbi by and and further in binding a novel Sbi the complement and of Sbi fragments of the region of Sbi to the as Sbi-E Sbi-III-IV and Sbi-IV as in The Sbi by using S. aureus as a The used for and and and and and and and The fragments the S. PubMed Scopus Google the and the and Sbi in strains or in a in an of was to a of and the incubated for an a by in of binding and by The was for and the a The proteins using by either the to a or a to the was with binding and the proteins with a for the or a for the protein was a and was using a protein and for for for for and for Sbi a with a by a The of the to for as and by as that all the and x-ray scattering data on the the III of Sbi-E on a protein of and and of and the is the scattering to data scattering was used to the of the protein for two on the The data using and to using the J. Scopus Google Scholar). The scattering and the of using the A. that small the is as also the scattering using the J. Scopus Google also the and the The of the was by of the scattering with that of serum The of Sbi was using the J. Full Text Full Text PDF PubMed Scopus Google the protein by an of was to a of a with the that the data the is the of is a and and the and the the A to the of and the well with by the J. Scopus Google the in and Sbi-IV to a to the with of human serum and serum or was to the with and proteins with a The binding of serum proteins by proteins and Sbi-IV was using using as a with a was used for further of the protein fragments by was used for protein binding on a has four was in with either or a of to a via group with cell being the and of a by a the surface the and cell The surface was with a of the to all four cell and of data of cell being the proteins and serum used to the of C3 binding to the and for C3dg binding to and Sbi-IV by the of a of C3dg to a binding as in using of the C3dg and by Sbi-III-IV was in with C3dg binding to a a two domain in the and of a of Sbi-III-IV as a C3dg The was in and to has been for human J. M. Sci. 2004; PubMed Scopus Google of the of complement activation used as as human J. Biol. Chem. Full Text PDF PubMed Google was to a on to C3 J. Immunol. PubMed Scopus Google Scholar). for of the C3 was by of C3 PubMed Scopus Google and of to with as the J. Biol. Chem. Full Text PDF PubMed Google Scholar). was incubated with and a of C3 with for a of as a PubMed Scopus Google Scholar). of the with and an in C3a is of the via on using previously J. Biol. Chem. Full Text PDF PubMed Google Scholar). C3dg and of the produced in as previously PubMed Scopus Google Scholar, A. J. Biol. PubMed Scopus Google Scholar). C3a was complement proteins used as in the and by on for C3dg and of complement system by A. J. M. F. J. Immunol. 2005; PubMed Scopus Google was used to inhibition by fragments and Sbi-IV of the classical mannose-binding lectin and alternative complement this of complement of the activation is via a of the with and in the in the of the classical pathway the of complement activation to the pathway. the Sbi fragment of protein was of human serum with the and for complement of The was in to the and a a serum and a inhibition was the using the for the of C3 was to a of via the Biochem. J. PubMed Scopus Google using the previously for the of of M.J. J. Biol. Chem. Full Text PDF PubMed Google Scholar). was to human serum in the of of C3 to of the Sbi fragments to a of to of the and incubated for was to a of and the on C3 activation that was to the alternative pathway was in the of Here complement activation was by the of the As a for complement human IgG was to the serum to a of of for by on a and the of of serum to of protein in the region of the on the and by of of in both the of a the in to was as previously Sci. S. A. PubMed Scopus Google that of was by was on a of serum that been incubated with Sbi-III-IV and with a using and that for of J. Immunol. Google Scholar). of incubated for with of and of Sbi-III-IV in a of of of Sbi-III-IV was in to the C3 to for was on via the of intact the of fragments, and an in the of the region of the of of of for Sbi-III-IV as a as to using this of and of of S. aureus of S. aureus and strains as previously F. T.J. J. Biol. Chem. Full Text Full Text PDF PubMed Scopus Google Scholar). S. aureus and to in with by and cell wall proteins by with by and the was as the wall by and and the was by by and in The was a and proteins with on and by by and using IgG fragments of by used a by and using the system of of the domain of the extracellular region of Sbi by using a of Sbi the to the The x-ray scattering for Sbi-E a of that the protein is in The and the and the for a globular protein of by a of The of Sbi-E has a for elongated Scopus Google Scholar). The of Sbi was using the J. Full Text Full Text PDF PubMed Scopus Google Scholar). the data with The in is elongated in and four domains by the of SAXS, this not be as the of but the elongated in to the of four domains, by A of the immunoglobulin-binding domains and of Sbi, previously on SpA domains and van Immunol. Scopus Google well with the domain of the proposed extracellular region of Sbi has also been in with the two novel domains as and on a of the with SpA domains, and the fragment the of Sbi that been to binding to M. PubMed Scopus Google we Sbi fragments being and As in for and Sbi-IV of domain the to the of a Sbi and Sbi-IV of serum that with Sbi to and an was with human serum and using and Sbi-IV as of the serum proteins in the the Sbi-III-IV is in but was found using a Sbi-IV The with in as fragments of complement component C3 by the and the of the in the as by it that Sbi-III-IV binds C3 of a and a and C3 protein be with a to β2-GPI, the previously for Sbi M. PubMed Scopus Google Scholar). 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Immunol. 1991; 147: Google Scholar). the C3dg and is Sbi-III-IV is as a a in the is the of C3dg to Sbi-III-IV is C3dg with a the that of the C3dg binding that the inhibitory of Sbi-III-IV is of binding to as to an Sbi-III-IV and Sbi-E and Sbi of the the C3 binding of Sbi with complement we the of the and all incubated with human serum on activation of the CP, MBLP, and binding was used as in Preincubation of human serum with two of the that bind C3 and the of all and MBLP, and AP, with both Sbi-E and as is in The complement inhibition is for all Sbi and of The inhibition was with having an of in the of Sbi domain the Sbi-IV a inhibition but of the alternative pathway, inhibition of the and classical is also we not been to show a Sbi domain III and complement component our suggest that the of both domains III and IV is for the of Sbi with all complement The either an inhibition of complement activation by the on the of the or a consumption of complement the that of serum to the two human serum was with and incubated with and Sbi-IV for to of the to the in The also in the of complement activation to the alternative pathway, as well as in the of all of complement of this is in is the of it is not in serum it by to in the of The of and to of it be the the of the and of in the that in the of both Sbi-E and the inhibition in all was of consumption of as in was a and C3 The is characterized not by the of a to intact but also by the of a fragment that is of the of C3 Biochem. J. PubMed Scopus Google Scholar). in the of Sbi-E and is the to complement the of C3 in the The of C3 activation was for both Sbi-E and Sbi-III-IV for the of the in the of that activation via the alternative pathway is to all of the C3 the By contrast, with and Sbi-IV produced a of C3 as the of the was either or to that in the The of C3 activation in the is consistent with both its to bind to C3 as well as its of inhibitory complement pathway By contrast, the inhibitory of Sbi-IV the alternative pathway be for its of a consumption of an inhibitory that either is the binding of Sbi-IV to C3 or to alternative pathway that the C3 consumption by Sbi-E and alternative pathway is for both C3 consumption is with of the C3 in is in The of Sbi fragment in activation of C3 via the alternative pathway and for Sbi-III-IV and the in the for the Sbi the alternative pathway to be to not the of C3 but also Sbi-III-IV a of of the Sbi-III-IV is incubated with or serum is the of a in by the in to and the by the It also be in the Sbi-E and Sbi-III-IV of that in the of C3 of intact in the We that C3 be of C3 and its serum that the of Sbi-III-IV was the of the by the in was consistent with it being an of Sbi-III-IV to We this by a and that of the C3 fragment of a we that the in Sbi-III-IV was incubated with serum was not was in a and a of it was to with either or with a serum A of the is in It be that the Sbi-III-IV of C3 by in the of is specifically together with by the also the in the of the that is in the that used for of the by the in the is also in the is in the the of this having been to the the in the of the of the a to the of was in to C3 to in the of The of this in and that the by a in the to C3 thus the that Sbi-III-IV but to an of Sbi with the S. aureus Sbi is associated with the S. aureus cell as was previously J. M. PubMed Scopus Google the ability of the extracellular region of Sbi to activate the human alternative pathway would be deleterious for the this we the of S. aureus for the of strains of S. aureus used in this as a in both SpA and Sbi would be as and an in Sbi is the protein of both and using IgG as the for the of Sbi and SpA, is in It be that for the of S. aureus Sbi is in the cell wall By contrast, the of the of S. aureus binding to the cell wall fraction, the of SpA in this the Sbi protein is in the and of the it is also in the the of Sbi in the cell wall fraction, and its in the in an in the the by using an of a as the not SpA, Sbi binds Fc fragments van Immunol. Scopus Google and thus of Sbi by the be the a of Sbi-E was also in the of Sbi in the to be to By and the complement system is of the of the innate immune a of small excreted protein factors that by the human pathogen S. aureus and that complement-mediated this van Kessel K.P. van Strijp Trends Microbiol. 2005; Full Text Full Text PDF PubMed Scopus Google Scholar). excreted proteins of the on the to the clearance of complement this a Staphylococcal protein binds and in inhibits the complement-mediated of human serum I. T. J. Immunol. 2005; PubMed Scopus Google by its by The inhibitory protein of S. aureus Haas C.J. Veldkamp K.E. Peschel A. Weerkamp F. Van Wamel W.J. Heezius E.C. Poppelier M.J. Van Kessel K.P. van Strijp J. 2004; PubMed Scopus Google binds to the on in a that via the complement Staphylococcal complement M. A. van Wamel W.J. van Kessel K.P. van Strijp Nat. Immunol. 2005; PubMed Scopus Google binds to the classical and alternative pathway C3 a bacterial surface and inhibits the of the bacterial in would of the to on the extracellular fibrinogen-binding protein and its recently discovered the region not but also in C3 (5Lee L.Y. Liang X. Hook M. Brown E.L. J. Biol. Chem. 2004; 279: 50710-50716Abstract Full Text Full Text PDF PubMed Scopus (103) Google Scholar, M. S. M. J. Biol. Chem. Full Text Full Text PDF PubMed Scopus Google Scholar, M. Nat. Immunol. PubMed Scopus Google Scholar). It has recently been that to both and a that in the activation of complement M. S. M. J. Biol. Chem. Full Text Full Text PDF PubMed Scopus Google Scholar, M. Nat. Immunol. PubMed Scopus Google Scholar). on Sbi that this excreted S. aureus protein not with the adaptive immune system via two immunoglobulin-binding domains but also domain with by to with complement component the group of excreted by S. aureus that the molecule of all of to be Sbi to the evasion by the of complement-mediated on our in binding Sbi interacts with C3 via contacts in C3dg and in to the and anaphylatoxin domains in the x-ray of human C3 A. 2005; PubMed Scopus Google Scholar). Sbi binding to C3dg in the of with the of to and on and binding of Sbi to the fragment a for it in the S. aureus and on both and on human the as of the to the of the the novel complement evasion that our has for Sbi is that of a consumption of via the fluid-phase activation of the alternative pathway. was with Sbi-E and with Sbi-III-IV but not with Sbi-IV Sbi-IV was inhibitory in an alternative pathway activation its of to be to of the and the excreted proteins with binding for the region to Sbi, also having a binding for C3 M. S. M. J. Biol. Chem. Full Text Full Text PDF PubMed Scopus Google Scholar, M. Nat. Immunol. PubMed Scopus Google Scholar). Sbi-III-IV is incubated with a of the C3 as a of Sbi-III-IV and the is that of of the Sbi-III-IV been to the of as this molecule is of the binding Sci. PubMed Scopus Google Scholar). It is that as an of the is to by the and its is to in the is a with IgG J. PubMed Scopus Google Scholar). A in the of would in it to as a of the alternative pathway C3 leading to the of many of C3. The that C3 consumption in the of the domain being to Sbi-IV on the a and C3 and on the that the the of the of the of to be Biochem. J. PubMed Scopus Google in for a molecule to be a either the C3 to be associated with the or the C3 of the has to be with its Sbi-III-IV was to bind and the alternative pathway is via the of in serum PubMed Scopus Google by the of the C3 with Sbi-III-IV be the of the futile complement consumption. alternative in by the of C3 binding to Sbi-III-IV is that the binding of C3 to Sbi-III-IV a the as to be the either or bind C3 M. S. M. J. Biol. Chem. Full Text Full Text PDF PubMed Scopus Google Scholar, M. Nat. Immunol. PubMed Scopus Google Sbi-III-IV binding to C3 an a the in with the and this a molecule of of the Sbi-III-IV a Sbi-E to serum would immunoglobulin G via its binding for the in domains and IgG is a for and has a to J. PubMed Scopus Google Scholar, Immunol. PubMed Scopus Google of the be to IgG rather to the Sbi-E the and fragments, two of for the of a serum was incubated with rather the IgG binding of Sbi-E the of Sbi-E of C3 and via of the that was in the Sbi-III-IV of C3 The ability of the extracellular region of Sbi to activate the human alternative pathway an as by J. M. PubMed Scopus Google Sbi is to the cell surface of S. would it be to the to a C3 a in specifically to its own Here we data that on the that Sbi is an S. aureus surface protein by that Sbi is in the and in the growth but not in the cell wall that S. aureus Sbi as an futile complement consumption in the of the of the host. that of Sbi is in the that the of Sbi is in the growth of the of protein for C3 consumption Sbi found in extracellular a growth with host proteins or with host that of Sbi be the of It is that the of C3dg with on and is for an response and for the of J. Biol. Google Scholar, Immunol. 2005; PubMed Scopus Google Scholar). that the binding of Sbi-III-IV to C3dg inhibits the ability of the to bind to a of this the innate and adaptive immune and thus S. aureus evade the human immune the x-ray of the domain of the S. aureus excreted protein has been both as a and in with human fragment M. Nat. Immunol. PubMed Scopus Google Scholar). is a protein in the of a of that the contacts with with an on the surface of the by two of and previously and and as being for the ability of and C3dg to bind to J. Immunol. PubMed Scopus Google Scholar). Sbi-IV to with the it would our the ability of Sbi-III-IV to the binding of C3dg to be the of the of the Sbi the of its IgG and its as a and the of a novel Sbi the complement system our of S. aureus and immune evasion in and in of as well as the of S. aureus on the inhibition of the human alternative pathway of complement activation by Sbi-IV a for of for complement-mediated We of for and for M. is for Staphylococcus aureus We also of for We to and J. of the for and for to to the was by the the the with
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Full frame distilled prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.
Codex and Gemma teacher scores by category
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.000 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.000 | 0.000 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.000 | 0.001 |
| Insufficient payload (model declined to judge) | 0.001 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it