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A molecular phylogenetic analysis of the Oedipodinae and their intercontinental relationships

2007· article· en· W2111811950 on OpenAlexafffund
Megan Fries, W. Chapco, Daniel Contreras

Bibliographic record

VenueJournal of Orthoptera Research · 2007
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicOrthoptera Research and Taxonomy
Canadian institutionsUniversity of Regina
FundersNatural Sciences and Engineering Research Council of CanadaAkdeniz ÜniversitesiCentre National de la Recherche ScientifiqueCentre de Coopération Internationale en Recherche Agronomique pour le DéveloppementUniversidad de GranadaAcademia SinicaCommonwealth Scientific and Industrial Research Organisation
KeywordsBiologyPhylogenetic treeTaxonVicarianceEvolutionary biologyEcologyPhylogeneticsCladogramLaurasiaCytochrome c oxidase subunit IZoologyPhylogeographyCladeGondwanaGeneticsPaleontologyGene

Abstract

fetched live from OpenAlex

Oedipodine grasshoppers occur throughout the major continents, making them the most widely distributed of the 30 subfamilies that comprise the Acrididae. Most species have been allocated to one of 15 tribes; some remain unassigned. The subfamily, according to Vickery, had an ancient origin, just after the breakup of Pangaea but before the separation of Laurasia from Africa. Thereafter, Oedipodinae continued to evolve in separate continental centers; some Nearctic species apparently descended more recently from Palearctic ancestors when land bridges still connected the two continents.Our objectives are to independently assess these biogeographic accounts, to examine the validity of several tribal constructs, and to shed light on problematic taxa such as Stethophyma and Machaerocera which have had, over the years, an ambivalent affiliation with Oedipodinae. To realize these goals, we sequenced and phylogenetically analyzed portions of four mitochondrial genes (coding for cytochrome oxidase subunits I and II, cytochrome b, and NADH dehydrogenase subunit V), totaling up to 2254 bp, in specimens collected in the Americas, Eurasia, Africa and Australia. Methodology entailed applying weighted and unweighted maximum parsimony, maximum likelihood and Bayesian techniques. A member of the Pyrgomorphidae served as the outgroup. The ages of evolutionary divisions were estimated using the program "r8s"; the date of 100 Mya, previously estimated as the time of divergence between the subfamilies Oedipodinae and Gomphocerinae, was used to calibrate our chronogram.In general, taxa appear to assort themselves according to continental land mass, rather than by tribe. Aiolopini, Bryodemini, Oedipodini and Sphingonotini proved to be nonmonophyletic, whereas there was no evidence to reject monophyly in Acrotylini, Chortophagini, Locustini and Psinidini. Phylogenetically, both Machaerocera and Stethophyma were well-positioned within the Oedipodinae, with Machaerocera closely aligned with Chortophaga and Encoptolophus, and Stethophyma tightly linked to Aiolopus. Duroniella, presently regarded as an oedipodinid, emerged strongly connected to the Gomphocerinae.The current biogeographical distribution of Oedipodinae is the result of widespread intercontinental dispersion. In particular, with the assistance of DIVA analysis, we argue that Asiamerica was the center of initial oedipodinid radiation about 94 Mya. Through a series of early dispersals, the remaining clusters of taxa were established. Somewhat surprisingly, this includes the branch leading to the Australian genera Austroicetes and Chortoicetes. In contrast, the multiple dispersals to the African continent occurred more recently. It would appear that North American oedipodinids had both an ancient and a more recent ancestry. The single South American species analyzed evolved very recently from North American ancestors.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.003

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.070
GPT teacher head0.305
Teacher spread0.235 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations41
Published2007
Admission routes2
Has abstractyes

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