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Record W2123392242 · doi:10.1074/jbc.m304359200

The Amitochondriate Eukaryote Trichomonas vaginalis Contains a Divergent Thioredoxin-linked Peroxiredoxin Antioxidant System

2004· article· en· W2123392242 on OpenAlex

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Bibliographic record

VenueJournal of Biological Chemistry · 2004
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicRedox biology and oxidative stress
Canadian institutionsnot available
FundersMedical Research CouncilDalhousie UniversityUniversità degli Studi di MilanoWellcome Trust
KeywordsThioredoxinPeroxiredoxinThioredoxin reductaseBiologyFerredoxin-thioredoxin reductaseBiochemistryOxidative stressCell biologyGeneticsPeroxidaseEnzyme

Abstract

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Trichomonas is an amitochondriate parasitic protozoon specialized for an anaerobic lifestyle. Nevertheless, it is exposed to oxygen and is able to cope with the resultant oxidative stress. In the absence of glutathione, cysteine has been thought to be the major antioxidant. We now report that the parasite contains thioredoxin reductase, which functions together with thioredoxin and thioredoxin peroxidase to detoxify potentially damaging oxidants. Thioredoxin reductase and thioredoxin also reduce cystine and so may play a role in maintaining the cellular cysteine levels. The importance of the thioredoxin system as one of the major antioxidant defense mechanisms in Trichomonas was confirmed by showing that the parasite responds to environmental changes resulting in increased oxidative stress by up-regulating thioredoxin and thioredoxin peroxidases levels. Sequence data indicate that the thioredoxin reductase of Trichomonas differs fundamentally in structure from that of its human host and thus may represent a useful drug target. The protein is generally similar to thioredoxin reductases present in other lower eukaryotes, all of which probably originated through horizontal gene transfer from a prokaryote. The phylogenetic signal in thioredoxin peroxidase is weak, but evidence from trees suggests that this gene has been subject to repeated horizontal gene transfers from different prokaryotes to different eukaryotes. The data are thus consistent with the complexity hypothesis that predicts that the evolution of simple pathways such as the thioredoxin cascade are likely to be affected by horizontal gene transfer between species. Trichomonas is an amitochondriate parasitic protozoon specialized for an anaerobic lifestyle. Nevertheless, it is exposed to oxygen and is able to cope with the resultant oxidative stress. In the absence of glutathione, cysteine has been thought to be the major antioxidant. We now report that the parasite contains thioredoxin reductase, which functions together with thioredoxin and thioredoxin peroxidase to detoxify potentially damaging oxidants. Thioredoxin reductase and thioredoxin also reduce cystine and so may play a role in maintaining the cellular cysteine levels. The importance of the thioredoxin system as one of the major antioxidant defense mechanisms in Trichomonas was confirmed by showing that the parasite responds to environmental changes resulting in increased oxidative stress by up-regulating thioredoxin and thioredoxin peroxidases levels. Sequence data indicate that the thioredoxin reductase of Trichomonas differs fundamentally in structure from that of its human host and thus may represent a useful drug target. The protein is generally similar to thioredoxin reductases present in other lower eukaryotes, all of which probably originated through horizontal gene transfer from a prokaryote. The phylogenetic signal in thioredoxin peroxidase is weak, but evidence from trees suggests that this gene has been subject to repeated horizontal gene transfers from different prokaryotes to different eukaryotes. The data are thus consistent with the complexity hypothesis that predicts that the evolution of simple pathways such as the thioredoxin cascade are likely to be affected by horizontal gene transfer between species. Trichomonas vaginalis is the protozoan parasite responsible for trichomoniasis in humans (1Petrin D. Delgaty K. Bhatt R. Garber G. Clin. Microbiol. Rev. 1998; 11: 300-317Crossref PubMed Google Scholar). This is the most common non-viral sexually transmitted infection, with an estimated >170 million cases occurring each year (2World Health Organization Global Prevalence and Incidence of Selected Curable Sexually Transmitted Diseases: Overview and Estimates. 2001; (WHO/CDS/CSR/EDC/2001.10)Google Scholar), and has been implicated as a major risk factor in predisposition to human immunodeficiency virus/AIDS (3Sorvillo F. Smith L. Kerndt P. Ash L Emerg. Infect. Dis. 2001; 7: 927-932Crossref PubMed Scopus (202) Google Scholar). Indeed it has been suggested that successful treatment of trichomoniasis may be the most cost-effective means by which to reduce human immunodeficiency virus incidence (3Sorvillo F. Smith L. Kerndt P. Ash L Emerg. Infect. Dis. 2001; 7: 927-932Crossref PubMed Scopus (202) Google Scholar). Current chemotherapy relies upon a single group of drugs, the 5-nitroimidazoles, and there are worrying signs that drug resistance may be emerging as a significant problem (4Upcroft P. Upcroft J.A. Clin. Microbiol. Rev. 2001; 14: 150-164Crossref PubMed Scopus (433) Google Scholar). Thus there is a need for new chemotherapeutic tools. The parasite itself is an unusual eukaryote and has been considered to be one of the earliest branching organisms (5Sogin M.L. Curr. Opin. Genet. Dev. 1997; 7: 792-799Crossref PubMed Scopus (73) Google Scholar), although current evidence for this view is not compelling (6Baldauf S.L. Roger A.J. Wenk-Siefert I. Doolittle W.F. Science. 2000; 290: 972-977Crossref PubMed Scopus (975) Google Scholar, 7Embley T.M. Hirt R.P. Curr. Opin. Genet. Dev. 1998; 8: 624-629Crossref PubMed Scopus (231) Google Scholar, 8Roger A.J. Am. Nat. 1999; 154: S146-S163Crossref PubMed Google Scholar). It lacks conventional mitochondria but possesses organelles termed hydrogenosomes that share common ancestry with mitochondria (9Dyall S.D. Johnson P.J. Curr. Opin. Microbiol. 2000; 3: 404-411Crossref PubMed Scopus (109) Google Scholar, 10van der Giezen M. Slotboom D.J. Horner D.S. Dyal P.L. Harding M. Xue G.P. Embley T.M. Kunji E.R. EMBO J. 2002; 21: 572-579Crossref PubMed Scopus (80) Google Scholar) and appear to be adaptations for the parasite's existence in an environment containing only low oxygen concentrations. Trichomonads are fundamentally fermentative organisms, with oxygen apparently not making a significant contribution to energy metabolism (11Martin W. Muller M. Nature. 1998; 392: 37-41Crossref PubMed Scopus (905) Google Scholar). Nevertheless, the cells are exposed to oxygen in the natural environment. This was most elegantly demonstrated by the finding that T. vaginalis isolated from patients unresponsive to the standard chemotherapy treatment with metronidazole is drug-resistant in in vitro tests, but only if oxygen is present (4Upcroft P. Upcroft J.A. Clin. Microbiol. Rev. 2001; 14: 150-164Crossref PubMed Scopus (433) Google Scholar, 12Rasoloson D. Tomkova E. Cammack R. Kulda J. Tachezy J. Parasitology. 2001; 123: 45-56Crossref PubMed Scopus (48) Google Scholar, 13Rasoloson D. Vanacova S. Tomkova E. Razga J. Hrdy I. Tachezy J. Kulda J. Microbiology. 2002; 148: 2467-2477Crossref PubMed Scopus (69) Google Scholar, 14Land K.M. Johnson P.J. Drug Res. Updates. 1999; 2: 289-294Crossref PubMed Scopus (65) Google Scholar). The implications for T. vaginalis of exposure to oxygen have been pondered over many years. Despite a report of the beneficial effect of low oxygen concentrations (growth being significantly enhanced (15Paget T.A. Lloyd D. Mol. Biochem. Parasitol. 1990; 41: 65-72Crossref PubMed Scopus (49) Google Scholar)), it is generally considered that oxygen provides problems rather than benefits. Some of the parasite's enzymes are inactivated by oxygen itself, notably key proteins of the hydrogenosomes, and various metabolites likely to arise from the metabolism of oxygen (such as hydrogen peroxide and hydroxyl free radical) are generally harmful to cells and so need to be countered. Most eukaryotes have glutathione as a key redox buffer and antioxidant, but trichomonads lack this and similar thiols (16Ellis J.E. Yarlett N. Cole D. Humphreys M.J. Lloyd D. Microbiology. 1994; 140: 2489-2494Crossref PubMed Scopus (68) Google Scholar). Thus cysteine has been considered the major cellular reducing agent and antioxidant, although T. vaginalis is able to generate thiols (propanethiol, methanethiol, and hydrogen sulfide, from the action of the unusual bacterial-like enzyme methionine-γ-lyase (17McKie A.E. Edlind T. Walker J. Mottram J.C. Coombs G.H. J. Biol. Chem. 1998; 273: 5549-5556Abstract Full Text Full Text PDF PubMed Scopus (59) Google Scholar)), which have been postulated to have antioxidant roles (16Ellis J.E. Yarlett N. Cole D. Humphreys M.J. Lloyd D. Microbiology. 1994; 140: 2489-2494Crossref PubMed Scopus (68) Google Scholar). Nevertheless, it was believed that the organism relies heavily upon cytosolic NADH oxidase (reducing oxygen to water) and NADPH oxidase (reducing oxygen to hydrogen peroxide) to prevent permeation of oxygen to the hydrogenosomes (18Linstead D.J. Bradley S. Mol. Biochem. Parasitol. 1988; 27: 125-133Crossref PubMed Scopus (45) Google Scholar). However, the generation of hydrogen peroxide by NADPH oxidase, and superoxide dismutase, poses the question as to how this and other reactive oxygen species (ROS) 1The abbreviations used are: ROSreactive oxygen speciesTRXRgene encoding thioredoxin reductaseTrxRprotein encoded by TRXRrTrxRrecombinant TrxR (equivalent nomenclature is used for thioredoxin (Trx) and thioredoxin peroxidase (TrxP) TrxP is also known as peroxiredoxin)DTNB5,5′-dithiobis(2-nitrobenzoic acid)E-64N-trans-epoxysuccinyl-l-leucine-4-guanidinobutylamideHGThorizontal gene transferESTexpressed sequence tagRACErapid amplification of cDNA endMLmaximum likelihood. are removed as T. vaginalis lacks catalase and glutathione-dependent peroxidase activities. An ascorbate peroxidase has been reported (19Page-Sharp M. Behm C.A. Smith G.D. Microbiology. 1996; 142: 207-211Crossref PubMed Scopus (21) Google Scholar), but it seemed likely that another system must also exist. reactive oxygen species gene encoding thioredoxin reductase protein encoded by TRXR TrxR (equivalent nomenclature is used for thioredoxin (Trx) and thioredoxin peroxidase (TrxP) TrxP is also known as horizontal gene transfer sequence amplification of cDNA likelihood. of peroxidases has been in that not glutathione as the but are by a protein known as thioredoxin which is itself by thioredoxin reductase J. Biol. Chem. 1994; Full Text PDF PubMed Google Scholar, E.R. J. Biol. Chem. 1996; Full Text Full Text PDF PubMed Scopus Google Scholar, E.R. 1999; PubMed Scopus Google Scholar). now known as are in eukaryotes with there being a of in different cellular E.R. 1999; PubMed Scopus Google Scholar, 1999; PubMed Scopus (202) Google Scholar, W. J. Biol. Chem. 2000; Full Text Full Text PDF PubMed Scopus (202) Google Scholar, N. D. L. P. S. 1998; PubMed Scopus Google Scholar, L. Biol. Chem. 2002; Google Scholar). It has been that reduce hydrogen peroxide and and a major cellular system the of oxidative J. Biol. Chem. 1994; Full Text PDF PubMed Google Scholar, L. Biol. Chem. 2002; Google Scholar). may in all eukaryotes but has been to be of to and the parasite as a means of in the absence of enzymes such as catalase and glutathione peroxidases L. Biol. Chem. 2002; Google Scholar, Smith K. J. Parasitol. 1998; PubMed Scopus Google Scholar, Coombs G.H. Parasitol. 1999; Full Text Full Text PDF PubMed Scopus Google Scholar, R.P. S. Embley T.M. Coombs G.H. Parasitol. 2002; Full Text Full Text PDF PubMed Scopus Google Scholar, S. E. Parasitol. Full Text Full Text PDF PubMed Scopus Google Scholar). metabolism may be of importance to amitochondriate eukaryotes, such as the and as as all lack glutathione S. E. Parasitol. Full Text Full Text PDF PubMed Scopus Google Scholar, L. P. Biol. 1999; 27: PubMed Scopus Google Scholar). possesses a system that is similar to the system in that it not thioredoxin as an I. S. E. Biochem. J. 1997; PubMed Scopus Google Scholar, I. S. E. Biochem. J. 1998; PubMed Scopus Google Scholar). has also been reported to TrxR Upcroft J.A. Upcroft P. Mol. Biochem. Parasitol. PubMed Scopus Google Scholar), but the in which the enzyme functions has not been This was to a cascade TrxR and is a antioxidant of T. vaginalis and to the of the of the cascade that it may be a drug target. the complexity hypothesis R. J.A. S. 1999; PubMed Scopus Google Scholar) predicts that horizontal gene transfer between species simple also the of the Trichomonas and of of T. vaginalis was in and as (17McKie A.E. Edlind T. Walker J. Mottram J.C. Coombs G.H. J. Biol. Chem. 1998; 273: 5549-5556Abstract Full Text Full Text PDF PubMed Scopus (59) Google Scholar). as for the and in for the and of and of T. apparently to and in an data of T. vaginalis P. Hirt and T. M. was from T. vaginalis the The system was used to the of the and used for cDNA and amplification of and and and and as in I. was and the for of for for and for for and The sequence of the of each the was by the sequence of from each of in a new The was from and and the for the The to of the the The was with and and to and to generate In the and the the was from and and to The TRXR was from by cDNA was and as a to the The TRXR was and and the system for of for for and for for and The and containing the TRXR sequence was with the enzymes to The sequence of each was confirmed by the of Sequence was for protein proteins have a to of and T. vaginalis TrxR and TrxP proteins to proteins from the Res. 1994; PubMed Scopus Google Scholar). N. R. M.J. Res. 1996; PubMed Scopus Google Scholar). and than of an removed the to phylogenetic and removed for the for TrxR a of was for of was also used for a of for the The K. Mol. Biol. 1996; Scopus Google Scholar) and F. 2001; PubMed Scopus Google Scholar) used to protein and for used of protein the from the Roger in with and by the of of used the with by a a of potentially The for the estimated The used to the TrxP and the for phylogenetic for the T. vaginalis TrxR and TrxP for for with the G. and in The trees for each hypothesis for the M. Mol. Biol. 1999; Scopus Google Scholar) in the The from vaginalis was by and to from and The used a of a of a of a of in and for in and for in exposed to the and a of with with and The T. vaginalis used to and levels. in the to the which was an of of and of and in the of the proteins was with and proteins to the a protein The proteins and with as by the for than was by the of G. J. Biol. Chem. Full Text PDF PubMed Google Scholar). was by the of S. Mol. Biochem. Parasitol. 2001; PubMed Scopus Google Scholar). was the protein with as in and by the standard T. vaginalis by cells in buffer and to the of and by repeated a was removed by for and protein in the was a protein proteins and for in containing and and with in containing and in containing and was by the of NADPH in a and of The was by of the J. Biol. Chem. Full Text PDF PubMed Google Scholar, M. 21: PubMed Scopus Google Scholar). The for was estimated by the concentrations from to was by the of NADPH in a of of and peroxide The was by the of the NADPH oxidase was by the of NADPH in and of reductase was by the of in a and of for the was to J. Biol. Chem. Full Text PDF PubMed Google Scholar) the as as of NADPH of reductase of the was by the of NADPH in a of and concentrations of the The of upon the of and TrxP in T. in of in with for the which in with in a over was by with anaerobic The standard was by of ascorbate present of to of significantly affected over and was for the and as (17McKie A.E. Edlind T. Walker J. Mottram J.C. Coombs G.H. J. Biol. Chem. 1998; 273: 5549-5556Abstract Full Text Full Text PDF PubMed Scopus (59) Google Scholar). and of TRXR of T. of an from T. vaginalis with sequence to TRXR the of the The was confirmed by TRXR of T. vaginalis is to a protein of with a of Thus the enzyme is similar in to low of and many lower eukaryotes. proteins fundamentally from the of humans and other eukaryotes, P. R.P. S. Embley T.M. Coombs G.H. Parasitol. 2002; Full Text Full Text PDF PubMed Scopus Google Scholar, S. M.L. K. J. Biochem. 2000; PubMed Scopus Google Scholar). of the of the T. vaginalis TrxR confirmed that it to the group and is from the group and the of An of the TrxR of T. vaginalis with other that it possesses the key cysteine in The of with other E. and E. is in the However, the T. vaginalis sequence differs from of the other there are of and in the of most other eukaryotes S. and and E. which are from the enzyme of T. vaginalis and the enzymes of G. and S. and of most and of and of T. of from T. vaginalis with sequence to and the of the of T. vaginalis is to a protein (TrxP) of with a of An of TrxP from T. vaginalis with of E. P. S. and human confirmed that this protein to the of The T. vaginalis sequence has and with the enzymes of E. E. P. S. and human of T. vaginalis is to a protein (Trx) of with a of similar to other The of T. vaginalis contains the but the T. vaginalis protein with other and with the proteins of P. S. E. and human and TrxP of T. vaginalis as a and TrxP of T. vaginalis and in in E. with a confirmed the of and and and that a of as a reductase, from NADPH to with as the T. vaginalis TrxR also the a low This is in to the E. which lacks such J. Biol. Chem. Full Text PDF PubMed Google Scholar). The of NADPH the was and the was In the of E. was the cystine also as the with the of cystine to The of and cystine by is and the of the to cystine that in this the cystine is Nevertheless, the finding that cystine is by the thioredoxin system suggests that it may be responsible for maintaining cysteine major redox buffer of in its cystine NADPH in the absence of The of hydrogen to a of and in a of the NADPH the was if was which that the T. vaginalis TrxR system is as as different from the of many prokaryotes 2000; PubMed Scopus Google Scholar, M. J. Biochem. 2000; PubMed Scopus Google Scholar) and the enzyme of E. I. S. E. Biochem. J. 1997; PubMed Scopus Google Scholar, I. S. E. Biochem. J. 1998; PubMed Scopus Google Scholar). hydrogen peroxide of was and used in the absence of low NADPH oxidase which was The was only of that of TrxR of T. of T. vaginalis and as the the reductase of T. vaginalis and as the E. and as of T. vaginalis and cystine as NADPH by containing and from of T. vaginalis and as the the reductase E. and as of T. vaginalis and cystine as by containing and from in a new and in T. vaginalis by with and a single with for each of and of T. vaginalis The of the for the with the of the cDNA the for the of the and the for the the proteins that all the proteins and and a single protein of the of and in a T. However, the proteins and in the The protein to the of the the protein is to with a present in the This is not unusual as many organisms that in and are in different cellular W. J. Biol. Chem. 2000; Full Text Full Text PDF PubMed Scopus (202) Google Scholar). gene was not in the T. vaginalis but of the sequence that is now other proteins with T. vaginalis was that the oxidative stress to which the parasite was exposed and gene by and protein by The exposure to oxygen concentrations through the of with a of the antioxidant ascorbate from the of an cysteine as a redox buffer and of hydrogen of an as a of of an as a of The and protein of TrxR not affected although there was a of in the and protein the was with cysteine In TrxP and and protein of the of the exposed to oxygen in ascorbate and and the parasite's exposure to oxidative stress such that the of the thioredoxin system are concentrations. The TrxP a by of cysteine but not the other to the and this is in with the that cysteine as a major in T. of cysteine upon the of with the protein apparently being there was a increased of the The of and protein for was cysteine was but significantly increased by of and TrxR of T. vaginalis the and and TrxR as a which also the TrxR from the The of this is by the of which not of the used to the in all of The TrxR from the G. and S. which lack with the of this The of the T. vaginalis TrxR was not by although it also lacks the of the of and not with In most the T. vaginalis sequence the of the in However, M. Mol. Biol. 1999; Scopus Google Scholar) of trees that the data significantly a between the T. vaginalis and the G. the a of this not appear in the TrxP of T. vaginalis of this protein a most only Most of the the G. and S. a there was from to that the T. vaginalis TrxP is a of this and it to the of a and The that T. vaginalis contains a redox system that may be a means cope with oxygen and its metabolites to which are The data for the and TrxP evidence that the proteins of T. vaginalis together in to reduce resulting from oxidative stress. The increased of in TrxP T. vaginalis was exposed to oxidative stress is consistent with a role in the parasite to such The finding that of cysteine to the in lower of and TrxP the that this itself to the of an reducing environment in the (16Ellis J.E. Yarlett N. Cole D. Humphreys M.J. Lloyd D. Microbiology. 1994; 140: 2489-2494Crossref PubMed Scopus (68) Google Scholar) and so with the Indeed the may be and cysteine from cystine and so may play a role in maintaining the of this key redox It is not only the of the and TrxP proteins increased in to environmental but so the of encoding This provides evidence that the are able to to by S. Tachezy J. P.J. J. Parasitol. PubMed Scopus (65) Google Scholar). It is also that the enhanced the was with the of TrxP was in the with T. vaginalis it is a of cysteine and cysteine S. E. Parasitol. Full Text Full Text PDF PubMed Scopus Google Scholar). T. vaginalis has been to the the of which to the of and cysteine in P. and G. is used as a for to be be by the action of (17McKie A.E. Edlind T. Walker J. Mottram J.C. Coombs G.H. J. Biol. Chem. 1998; 273: 5549-5556Abstract Full Text Full Text PDF PubMed Scopus (59) Google Scholar, S. E. Parasitol. Full Text Full Text PDF PubMed Scopus Google Scholar), the reductase may be the as in and Rev. Microbiol. 1997; PubMed Scopus Google Scholar). It has been that reductase in E. is thioredoxin M. P. J. 1990; PubMed Scopus Google Scholar), and if the is for T. vaginalis it is that the increased was in the an of the cysteine from the of resulting from the of and to the that has functions in T. vaginalis and is not only in the of has been implicated in many other cellular in and the of reductase and reductase and the of the of various M. P. J. 1990; PubMed Scopus Google Scholar, T. S. J. 2001; PubMed Scopus Google Scholar, F. D. J. Biol. Chem. 1999; Full Text Full Text PDF PubMed Scopus Google Scholar, Rev. Biochem. PubMed Google Scholar, J. Biochem. 2000; PubMed Scopus Google Scholar). The TrxR of T. vaginalis to the group of which fundamentally from in R.P. S. Embley T.M. Coombs G.H. Parasitol. 2002; Full Text Full Text PDF PubMed Scopus Google Scholar), and it is not to the E. the T. vaginalis TrxR to the parasite's with of E. being a and a for which is not used by E. TrxR J. Biol. Chem. Full Text PDF PubMed Google Scholar). of the that arise from the that eukaryotes this of TrxR through horizontal gene transfer from a R.P. S. Embley T.M. Coombs G.H. Parasitol. 2002; Full Text Full Text PDF PubMed Scopus Google Scholar). The enzymes are most to from but there was evidence from the that the are the there is for the enzyme with the which is to have been a of the The Trichomonas not with the other eukaryotes in the trees and its of the is by the that it lacks the that in most of the However, its is only by the and thus there is evidence that it its TrxR from other eukaryotes. the G. and S. also lack but with the of the that the of may have and that to the of T. vaginalis and An of the is that it also contains the TrxR from the the suggests that the species for TrxR from a TrxP of T. vaginalis is similar to the TrxR of the parasite in being from the proteins in other eukaryotes. TrxP to the of but a phylogenetic that the for eukaryotes is not of The is thus consistent with repeated horizontal gene transfers from prokaryotes to eukaryotes of for TrxP and T. vaginalis the gene for TrxP from the other eukaryotes gene transfer from prokaryotes to eukaryotes has J. M.L. J. 2002; PubMed Scopus Google Scholar, Embley T.M. Roger A.J. Curr. Biol. Full Text Full Text PDF PubMed Scopus Google Scholar, T.A. Hirt R.P. Embley T.M. 154: PubMed Scopus (65) Google Scholar), with the thioredoxin system being suggested as an of a simple enzyme system for which from to eukaryote is likely to have R. J.A. S. 1999; PubMed Scopus Google Scholar). only are trees consistent with this but in the of T. vaginalis have also that with potentially different The of this that the system provides a means to detoxify in T. It to be not the system is for the of T. vaginalis in its but the finding that S. TrxR glutathione reductase for G. Rev. Microbiol. 2000; PubMed Scopus Google Scholar) and that TrxR is for which lacks glutathione reductase F. M. S. K. J. Biol. Chem. 2002; Full Text Full Text PDF PubMed Scopus (68) Google Scholar), for the that T. which lacks glutathione reductase, this is the the TrxR of the parasite represent a of it differs fundamentally from the the parasite be most if parasite the P. N. J. 1999; PubMed Scopus Google Scholar). The T. vaginalis is in with Horner of of Roger of and

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.050
Threshold uncertainty score0.711

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.014
GPT teacher head0.249
Teacher spread0.235 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it