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Assessing the statistical power of genetic analyses to detect multiple mating in fishes

2002· article· en· W2143037475 on OpenAlexaff
Bryan D. Neff, Trevor E. Pitcher

Bibliographic record

VenueJournal of Fish Biology · 2002
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicAnimal Behavior and Reproduction
Canadian institutionsUniversity of TorontoWestern University
Fundersnot available
KeywordsBiologyGambusiaOffspringMosquitofishPoeciliidaeAlleleLocus (genetics)PoeciliaMatingGeneticsEvolutionary biologyZoologyFish <Actinopterygii>GeneFishery

Abstract

fetched live from OpenAlex

A single‐sex model is presented that calculates the probability of detecting multiple mating (PrDM) given genetic data from the single genetic parent and a sample of its offspring. The model incorporates the effects of numbers of loci, alleles, offspring and genetic parents contributing to the multiple mating, all of which effect PrDM. The model is used to determine the actual number of loci and offspring that are required to detect multiply mated broods with high probability (80 and 95%). For example, if two sires contribute with equal fertilization success to multiply mated broods, then only 10 offspring and one locus with seven equally common alleles are required to ensure that 80% of multiple mated broods are detected. Ninety‐five per cent of multiple mated broods can be detected with 10 offspring and five loci with four equally common alleles. The utility of the model is demonstrated with biological examples addressing geographic variation in multiple paternity among natural populations of guppies Poecilia reticulata and mosquitofish Gambusia holbrooki.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.091
metaresearch head score (Gemma)0.236
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.091
Threshold uncertainty score0.479

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0910.236
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.002
Bibliometrics0.0020.001
Science and technology studies0.0010.005
Scholarly communication0.0020.002
Open science0.0020.002
Research integrity0.0020.002
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.096
GPT teacher head0.342
Teacher spread0.246 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations133
Published2002
Admission routes1
Has abstractyes

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