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Record W2158952520 · doi:10.1093/sysbio/syp016

Bootstrap Support Is Not First-Order Correct

2009· article· en· W2158952520 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueSystematic Biology · 2009
Typearticle
Languageen
FieldMathematics
TopicStatistical Methods and Inference
Canadian institutionsDalhousie University
Fundersnot available
KeywordsInterpretation (philosophy)Value (mathematics)Space (punctuation)Order (exchange)MathematicsTree (set theory)LimitingBoundary (topology)StatisticsComputer scienceCombinatoricsMathematical analysis

Abstract

fetched live from OpenAlex

The appropriate interpretation of bootstrap support for splits and the question of what constitutes large bootstrap support have received considerable attention. One desirable interpretation, indeed the interpretation that was put forward when bootstrap support for splits was first introduced, is that 1-minus bootstrap support is a P value for the hypothesis that the split is not well resolved. As a P value, bootstrap support has been argued to be first-order correct. By obtaining the limiting distribution of bootstrap support for a split when maximum likelihood estimation is conducted, it is shown that bootstrap support is not first-order correct and insight is provided into the nature of the problem. Borrowing from earlier results, it is also shown that similar results hold when the neighbor-joining algorithm is used. Examples suggest that bootstrap support is generally conservative as a P value and give insight as to why this is usually the case. The analysis indicates that the problem is largely due to the unusual nature of tree space where boundary trees always have at least 2 neighbors.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.004
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Theoretical or conceptual · Consensus signal: Theoretical or conceptual
GenreCandidate signal: Methods · Consensus signal: none
Teacher disagreement score0.842
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.004
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.152
GPT teacher head0.414
Teacher spread0.262 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it