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Record W2168413498 · doi:10.1089/omi.2011.0007

Policy and Data-Intensive Scientific Discovery in the Beginning of the 21st Century

2011· article· en· W2168413498 on OpenAlexaff
Vural Özdemir, Charles V. Smith, Kathleen D. Bongiovanni, David C. Cullen, Bartha Maria Knoppers, Andrew Lowe, Mette A. Peters, Robert Robbins, Elizabeth Stewart, Gene Yee, Yi‐Kuo Yu, Eugene Kolker

Bibliographic record

VenueOMICS A Journal of Integrative Biology · 2011
Typearticle
Languageen
FieldComputer Science
TopicResearch Data Management Practices
Canadian institutionsMcGill University
FundersDivision of Biological Infrastructure
KeywordsScientific discoveryData scienceComputer sciencePsychologyCognitive science

Abstract

fetched live from OpenAlex

Recent developments in our ability to capture, curate, and analyze data, the field of data-intensive science (DIS), have indeed made these interesting and challenging times for scientific practice as well as policy making in real time. We are confronted with immense datasets that challenge our ability to pool, transfer, analyze, or interpret scientific observations. We have more data available than ever before, yet more questions to be answered as well, and no clear path to answer them. We are excited by the potential for science-based solutions to humankind's problems, yet stymied by the limitations of our current cyberinfrastructure and existing public policies. Importantly, DIS signals a transformation of the hypothesis-driven tradition of science ("first hypothesize, then experiment") to one that is typified by "first experiment, then hypothesize" mode of discovery. Another hallmark of DIS is that it amasses data that are public goods (i.e., creates a "commons") that can further be creatively mined for various applications in different sectors. As such, this calls for a science policy vision that is long term. We herein reflect on how best to approach to policy making at this critical inflection point when DIS applications are being diversified in agriculture, ecology, marine biology, and environmental research internationally. This article outlines the key policy issues and gaps that emerged from the multidisciplinary discussions at the NSF-funded DIS workshop held at the Seattle Children's Research Institute in Seattle, on September 19-20, 2010.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.129
metaresearch head score (Gemma)0.149
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesnone
DomainCandidate signal: Methods · Consensus signal: none
Study designCandidate signal: Theoretical or conceptual · Consensus signal: Theoretical or conceptual
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.871
Threshold uncertainty score0.681

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.1290.149
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0020.002
Bibliometrics0.0040.008
Science and technology studies0.0090.058
Scholarly communication0.0300.064
Open science0.0050.014
Research integrity0.0270.034
Insufficient payload (model declined to judge)0.0070.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.133
GPT teacher head0.381
Teacher spread0.248 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

Study designTheoretical or conceptual
DomainMethods
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations29
Published2011
Admission routes1
Has abstractyes

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