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Record W2496494963 · doi:10.1007/978-1-61779-915-0_6

Ultrasensitive Visual Fluorescence Detection of Heavy Metal Ions in Water Based on DNA-Functionalized Hydrogels

2012· book-chapter· en· W2496494963 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.
aboutThe title or abstract carries a Canadian signal from the geographic lexicon.

Bibliographic record

VenueSpringer protocols handbooks/Springer protocols · 2012
Typebook-chapter
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicAdvanced biosensing and bioanalysis techniques
Canadian institutionsUniversity of Waterloo
Fundersnot available
KeywordsSelf-healing hydrogelsMetal ions in aqueous solutionFluorescenceMetalHeavy metalsChemistryDNANanotechnologyBiophysicsMaterials scienceEnvironmental chemistryBiochemistryPolymer chemistryBiologyOpticsOrganic chemistryPhysics

Abstract

fetched live from OpenAlex

Heavy metal contamination of oceans, lakes, and other water resources can occur by both natural and human-related processes. Human exposure to heavy metals such as mercury is known to cause a number of serious health problems. Due to its high toxicity and bioaccumulative properties, the maximum toxic level of mercury in drinking water is set to be 10 nM or 2 parts-per-billion by the US EPA. Therefore, detection of mercury at such a low concentration poses an analytical challenge. While analytical instruments such as ICP-MS are still very widely used for heavy metal analysis, biosensors, are emerging as a cost-effective alternative allowing on-site and real-time detection. We herein describe a protocol for preparing polyacrylamide hydrogel-based biosensors functionalized with a thymine-rich DNA that can effectively detect mercury in water. Detection is achieved by the selective binding of Hg2+ between two thymine bases inducing a hairpin structure where upon the addition of SYBR Green I dye, green fluorescence is observed. In the absence of Hg2+, the addition of the dye results in yellow fluorescence. This hydrogel-based sensor can easily detect 10 nM Hg2+ using the naked eye, can be regenerated using a simple acid treatment, and can be dried for storage and easily rehydrated. This sensor is also used to detect Hg2+ from Lake Ontario water samples spiked with mercury. In the case where a cationic gel formulation is used, the background fluorescence can be effectively suppressed to increase sensitivity. The future research directions of using such gels to detect other metal ions and to detect metal ions in ocean water are also discussed.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Protocol · Consensus signal: Protocol
Teacher disagreement score0.274
Threshold uncertainty score0.999

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.020
GPT teacher head0.297
Teacher spread0.277 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it