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The database of the <scp>PREDICTS</scp> (Projecting Responses of Ecological Diversity In Changing Terrestrial Systems) project
Lawrence N. Hudson, Tim Newbold, Sara Contu, Samantha L. L. Hill, Igor Lysenko, Adriana De Palma, Helen R. P. Phillips, Tamera I Alhusseini, Felicity E Bedford, Dominic J. Bennett, Hollie Booth, Victoria J. Burton, Charlotte W T Chng, Argyrios Choimes, David Correia, Julie Day, Susy Echeverría‐Londoño, Susan Emerson, Di Gao, Morgan Garon, Michelle L. K. Harrison, Daniel J. Ingram, Martin Jung, Victoria Kemp, Lucinda Kirkpatrick, Callum D. Martin, Yuan Pan, Gwilym Pask-Hale, Edwin Pynegar, Alexandra Robinson, Katia Sánchez-Ortiz, Rebecca A. Senior, Benno I. Simmons, Hannah J. White, Hanbin Zhang, Job Aben, Stefan Abrahamczyk, Gilbert B. Adum, Virginia Aguilar‐Barquero, Marcelo A. Aizen, Belén Albertos, E L Alcala, María del Mar Alguacil, Audrey Alignier, Marc Ancrenaz, Alan N. Andersen, Enrique Arbeláez‐Cortés, Inge Armbrecht, Víctor Arroyo‐Rodríguez, Tom Aumann, Jan C. Axmacher, Badrul Azhar, Adrián B. Azpiroz, Lander Baeten, Adama Bakayoko, Andràs Báldí, John E. Banks, Sharad Kumar Baral, Jos Barlow, B.I.P. Barratt, Lurdes Barrico, Paola Bartolommei, Diane M. Barton, Yves Basset, Péter Batáry, Adam J. Bates, Bruno Baur, Erin M. Bayne, Pedro Beja, Suzan Benedick, Åke Berg, Henry Bernard, Nicholas Berry, Dinesh Bhatt, Jake E. Bicknell, Jochen H. Bihn, Robin J. Blake, Kadiri Serge Bobo, Roberto Bóçon, Teun Boekhout, Katrin Böhning‐Gaese, Kevin J. Bonham, Paulo A. V. Borges, Sérgio Henrique Borges, Céline Boutin, Jérémy Bouyer, Cibele Bragagnolo, Jodi Brandt, Francis Q. Brearley, Isabel Brito, Vicenç Bros, Jörg Brunet, Grzegorz Buczkowski, Christopher M. Buddle, R.J.F. Bugter, Erika Buscardo, Jörn Buse, Jimmy Cabra‐García, Nilton C. Cáceres, Nicolette L. Cagle, María Calviño‐Cancela, Sydney A. Cameron, Eliana M. Cancello, Rut Caparrós, Pedro Cardoso, Dan Carpenter, Tiago F. Carrijo, Anelena Lima de Carvalho, Camila Righetto Cassano, Helena Castro, Alejandro Antonio Castro-Luna, Cerda B. Rolando, Alexis Cerezo, Matthieu Chauvat, Morten Christensen, Francis Michael Clarke, Daniel F. R. Cleary, Giorgio Colombo, Stuart Connop, Michael Craig, Leopoldo Cruz‐López, Saul A. Cunningham, Biagio D’Aniello, Neil D’Cruze, Pedro Giovâni da Silva, Martin Dallimer, Emmanuel Danquah, Ben Darvill, Jens Dauber, Adrian L. V. Davis, Jeff Dawson, Claudio de Sassi, Benoı̂t de Thoisy, Olivier Deheuvels, Alain Déjean, Jean‐Louis Devineau, Tim Diekötter, Jignasu V Dolia, Erwin Domínguez, Yamileth Domínguez‐Haydar, Silvia Dorn, Isabel Draper, Niels Dreber, Bertrand Dumont, Simon G. Dures, Mats Dynesius, Lars Edenius, Paul Eggleton, Felix Eigenbrod, Zoltán Elek, Martin H. Entling, Karen J. Esler, Ricardo F. de Lima, Aisyah Faruk, Nina Farwig, Tom M. Fayle, Antonio Felicioli, Annika M. Felton, R. J. Fensham, Ignacio C. Fernández, Catarina Ferreira, Gentile Francesco Ficetola, Cristina Fiera, Bruno K. C. Filgueiras, Hüseyin Kansur Fırıncıoğlu, David J. Flaspohler, Andreas Floren, Steven J. Fonte, Anne Fournier, Markus Franzén, Lauchlan H. Fraser, Gabriella M. Fredriksson, Geraldo de Brito Freire, Tiago Frizzo, Daisuke Fukuda, Dario Furlani, René Gaigher, Jörg U. Ganzhorn, Karla Patricia Valdés García, Juan C. García–R, Jenni G. Garden, Ricardo Garilleti, Baoming Ge, Benoît Gendreau-Berthiaume, P.J. Gerard, Carla Gheler‐Costa, Benjamin Gilbert, Paolo Giordani, Simonetta Giordano, Carly Golodets, Laurens G L Gomes, Rachelle K. Gould, Dave Goulson, Aaron D. Gove, Laurent Granjon, Ingo Graß, Claudia L. Gray, James Grogan, Weibin Gu, Moisès Guardiola, Nihara Gunawardene, Álvaro G. Gutiérrez, Doris L. Gutiérrez‐Lamus, Daniela H. Haarmeyer, Mick E. Hanley, Thor Hanson, Nor Rasidah Hashim, Shombe N. Hassan, Richard G. Hatfield, Joseph E. Hawes, Matt W. Hayward, Christian Hébert, Alvin J. Helden, John‐André Henden, Philipp Henschel, Lionel Hernández, James P. Herrera, Farina Herrmann, Félix Herzog, Diego Higuera-Díaz, Branko Hilje, Hubert Höfer, Anke Hoffmann, Finbarr G. Horgan, Elisabeth Hornung, Roland Horváth, Kristoffer Hylander, Paola Isaacs‐Cubides, Hiroaki Ishida, Masahiro Ishitani, Carmen T. Jacobs, Vı́ctor J. Jaramillo, Birgit Jauker, Fabiola Jiménez Hernández, McKenzie F. Johnson, Virat Jolli, Mats Jonsell, S. Nur Juliani, Thomas S. Jung, Vena Kapoor, Heike Kappes, Vassiliki Kati, Eric Katovai, Klaus Kellner, Michael Kessler, Kathryn R. Kirby, Andrew M. Kittle, Mairi E. Knight, Eva Knop, Florian Köhler, Matti Koivula, Annette Kolb, Mouhamadou Koné, Ádám Kőrösi, Jochen Krauß, Ajith Kumar, Raman Kumar, David J. Kurz, Alex S. Kutt, Thibault Lachat, Victoria Lantschner, Francisco Lara, Jesse R. Lasky, Steven C. Latta, William F. Laurance, Patrick Lavelle, Violette Le Féon, Gretchen LeBuhn, Jean‐Philippe Légaré, Valérie Lehouck, María Vanessa Lencinas, Pia E. Lentini, Susan G. Letcher, Qi Li, Simon A Litchwark, Nick A. Littlewood, Yunhui Liu, Nancy Lo‐Man‐Hung, Carlos A. López‐Quintero, Mounir Louhaichi, Gábor L. Löveï, Manuel Esteban Lucas‐Borja, Víctor H. Luja, Matthew Scott Luskin, M. Cristina MacSwiney G., Kaoru Maetô, Tibor Magura, Neil Aldrin D. Mallari, Louise A. Malone, Patrick K. Malonza, Jagoba Malumbres‐Olarte, Salvador Mandujano, Inger Elisabeth Måren, E. Marín-Spiotta, Charles J. Marsh, E. J. P. Marshall, Eliana Martínez Pachón, Guillermo Martínez Pastur, David Moreno‐Mateos, Margaret M. Mayfield, Vicente Mazimpaka, Jennifer L. McCarthy, Kyle P. McCarthy, Quinn S. McFrederick, Sean McNamara, Nagore G. Medina, Rafael Medina, José Luis Mena, Estefanía Micó, Grzegorz Mikusiński, Jeffrey C. Milder, James R. Miller, Daniel Rafael Miranda‐Esquivel, Melinda L. Moir, Carolina L. Morales, Mary Nyawira Muchane, Muchane Muchai, Sonja Mudri‐Stojnić, A. Nur Munira, Antonio Muoñz-Alonso, B F Munyekenye, Robin Naidoo, Archana Naithani, Michiko Nakagawa, Akihiro Nakamura, Yoshihiro Nakashima, Shoji Naoe, Guiomar Nates‐Parra, Darío Navarrete‐Gutiérrez, Luis Navarro-Iriarte, Paul K. Ndang’ang’a, Eike Lena Neuschulz, Jacqueline T. Ngai, Violaine Nicolas, Sven G. Nilsson, Norbertas Noreika, Olivia Norfolk, Jorge Ari Noriega, David A. Norton, Nicole M. Nöske, A. Justin Nowakowski, Catherine Numa, Niall O’Dea, Patrick O’Farrell, William Oduro, Sabine Oertli, Caleb Ofori‐Boateng, Christopher Omamoke Oke, Vicencio Oostra, Lynne M. Osgathorpe, Samuel Eduardo Otavo, Navendu Page, Juan Paritsis, Alejandro Parra‐H, Luke Parry, Guy Pe’er, Peter B. Pearman, Nicolás Pelegrín, Raphaël Pélissier, Carlos A. Peres, Pablo L. Peri, Anna Persson, Theodora Petanidou, Marcell K. Peters, Rohan Pethiyagoda, Ben Phalan, T. Keith Philips, Finn C. Pillsbury, Jimmy Pincheira‐Ulbrich, Eduardo Pineda, Joan Pino, Jaime Pizarro‐Araya, Andrew J. Plumptre, Santiago L. Poggio, Natalia Politi, Pere Pons, Katja Poveda, Eileen F. Power, Steven J. Presley, Vânia Proença, Marino Quaranta, Carolina Quintero, Romina Rader, B. R. Ramesh, Martha Patricia Ramírez‐Pinilla, Jai Ranganathan, Claus Rasmussen, Nicola A Redpath-Downing, J. Leighton Reid, Yana Teixeira dos Reis, José María Rey Beñayas, Juan Carlos Rey‐Velasco, Chevonne Reynolds, Danilo Bandini Ribeiro, Miriam H. Richards, Barbara A. Richardson, M.J. Richardson, Rodrigo Macip Ríos, R. Μ. Robinson, Carolina A. Robles, Jörg Römbke, Luz Piedad Romero‐Duque, Matthias Rös, Loreta Rosselli, Stephen J. Rossiter, Dana Roth, T’ai H. Roulston, Laurent Rousseau, André V. Rubio, Jean‐Claude Ruel, Szabolcs Sáfián, Romeo A. Saldaña‐Vázquez, Kateřina Sam, Ulrika Samnegård, Joana Santana, Xavier Santos, Nancy A. Schellhorn, Menno Schilthuizen, Ute Schmiedel, Christine B. Schmitt, Nicole L. Schon, Christof Schüepp, Katharina Schumann, Oliver Schweiger, Dawn M. Scott, Kenneth A. Scott, Jodi L. Sedlock, Steven S. Seefeldt, Ghazala Shahabuddin, Graeme Shannon, Douglas Sheil, Frederick H. Sheldon, Eyal Shochat, Stefan J. Siebert, Fernando A. B. Silva, Javier A. Simonetti, Eleanor M. Slade, Jo Smith, Allan H. Smith‐Pardo, Navjot S. Sodhi, Eduardo Somarriba, Ramón A. Sosa, Martin‐Hugues St‐Laurent, Brian M. Starzomski, Constantí Stefanescu, Ingolf Steffan‐Dewenter, Philip C. Stouffer, Jane C. Stout, Ayron M. Strauch, Matthew J. Struebig, Zhimin Su, Marcela Suarez‐Rubio, Shinji Sugiura, Keith S. Summerville, Yik‐Hei Sung, Hari Sutrisno, Jens‐Christian Svenning, Tiit Teder, Caragh G. Threlfall, Anu Tiitsaar, Jacqui H. Todd, Rebecca K. Tonietto, Ignasi Torre, Béla Tóthmérész, Teja Tscharntke, Edgar C. Turner, Jason M. Tylianakis, Márcio Uehara‐Prado, J. Nicolás Urbina‐Cardona, Denis Vallan, Adam J. Vanbergen, Heraldo L. Vasconcelos, Kiril Vassilev, Hans A. F. Verboven, Maria João Verdasca, José R. Verdú, Carlos Vergara, Pablo M. Vergara, Jort Verhulst, Massimiliano Virgilio, Lien Van Vu, Edward M Waite, Tony R. Walker, Hua‐Feng Wang, Yanping Wang, James I. Watling, Britta Weller, Konstans Wells, Catrin Westphal, Edward Debrah Wiafe, Christopher D. Williams, Michael R. Willig, John C. Z. Woinarski, Jan Wolf, Volkmar Wolters, Ben A. Woodcock, Jihua Wu, Joseph M. Wunderle, Yuichi Yamaura, Satoko Yoshikura, Douglas W. Yu, Andrey S. Zaitsev, Juliane Zeidler, Fasheng Zou, Ben Collen, Rob M. Ewers, Georgina M. Mace, Drew W. Purves, Jörn P. W. Scharlemann, Andy Purvis
Bibliographic record
VenueEcology and Evolution · 2016
Typearticle
Languageen
FieldEnvironmental Science
TopicEcology and Vegetation Dynamics Studies
Canadian institutionsDalhousie UniversityUniversité du Québec à RimouskiBishop's UniversityDepartment of Environment and ConservationNatural Resources CanadaUniversity of VictoriaUniversity of New BrunswickCanadian Forest ServiceUniversity of TorontoThompson Rivers UniversityTrent UniversityMcGill UniversityYukon Department of EnvironmentCarleton UniversityUniversity of British ColumbiaMinistère de l'Agriculture, des Pêcheries et de l'AlimentationEnvironment and Climate Change CanadaUniversité LavalUniversity of AlbertaBrock UniversityUniversité du Québec à MontréalNorthern Alberta Institute of Technology
FundersNatural Environment Research CouncilSight Research UKBiotechnology and Biological Sciences Research CouncilDepartamento Administrativo de Ciencia, Tecnología e Innovación (COLCIENCIAS)
KeywordsDiversity (politics)EcologyBiodiversityFunctional diversityDatabaseGeographyComputer scienceBiologySociology
Abstract
The PREDICTS project-Projecting Responses of Ecological Diversity In Changing Terrestrial Systems (www.predicts.org.uk)-has collated from published studies a large, reasonably representative database of comparable samples of biodiversity from multiple sites that differ in the nature or intensity of human impacts relating to land use. We have used this evidence base to develop global and regional statistical models of how local biodiversity responds to these measures. We describe and make freely available this 2016 release of the database, containing more than 3.2 million records sampled at over 26,000 locations and representing over 47,000 species. We outline how the database can help in answering a range of questions in ecology and conservation biology. To our knowledge, this is the largest and most geographically and taxonomically representative database of spatial comparisons of biodiversity that has been collated to date; it will be useful to researchers and international efforts wishing to model and understand the global status of biodiversity.
Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.
How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
metaresearch head score (Codex)0.003
metaresearch head score (Gemma)0.018
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Dataset · Consensus signal: Dataset
Teacher disagreement score0.068
Threshold uncertainty score0.228
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.003 | 0.018 |
| Meta-epidemiology (narrow) | 0.001 | 0.001 |
| Meta-epidemiology (broad) | 0.001 | 0.001 |
| Bibliometrics | 0.005 | 0.013 |
| Science and technology studies | 0.001 | 0.001 |
| Scholarly communication | 0.003 | 0.002 |
| Open science | 0.003 | 0.003 |
| Research integrity | 0.001 | 0.001 |
| Insufficient payload (model declined to judge) | 0.068 | 0.027 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
Opus teacher head0.023
GPT teacher head0.243
Teacher spread0.220 · how far apart the two teachers sit on this one work
Validation status
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreDataset
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".
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Citations273
Published2016
Admission routes1
Has abstractyes