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Record W2608654376 · doi:10.24918/cs.2015.13

Teaching Genetic Linkage and Recombination through Mapping with Molecular Markers

2015· article· en· W2608654376 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueCourseSource · 2015
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetics, Bioinformatics, and Biomedical Research
Canadian institutionsUniversity of British Columbia
Fundersnot available
KeywordsGeneticsGenetic linkageLinkage (software)BiologyContext (archaeology)Computational biologyGene

Abstract

fetched live from OpenAlex

Most introductory genetics courses cover genetic linkage, a core concept in the <em>CourseSource </em>genetics learning outcome framework. Although it is a classical genetics topic, genetic linkage remains an important concept to understand in order to grasp modern genetics research approaches including Single Nucleotide Polymorphism (SNP) mapping, Genome Wide Association Studies (GWAS), and gene discovery. Typically, genetic linkage is taught in a very traditional way within our introductory genetics classes. Invariably, we see students struggling with the same aspects of linkage: how to distinguish between parental and recombinant combinations of alleles and how to relate phenotype proportions to meiotic processes and outcomes. We designed a lesson that provides a practical and experimental context to target these common student difficulties in learning about linkage and recombination. This student-centered interactive lesson and associated post-class problem set teaches genetic linkage through mapping a gene by determining co-segregation of a phenotype with microsatellite sequences revealed by gel electrophoresis banding patterns. This lesson includes very interactive class sessions and a follow-up problem set and post-test that allows students to develop a deeper understanding of genetic linkage, and provides instructors with insights about student thinking. When we implemented this lesson, we observed a dramatic increase in student understanding of genetic linkage and how to use molecular markers to map the location of genes.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.870
Threshold uncertainty score0.528

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.019
GPT teacher head0.271
Teacher spread0.253 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it