Bayesian adaptive clinical trials of combination treatments
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Bibliographic record
Abstract
Randomized clinical trials (RCT) increasingly investigate combination therapies. Strong biological rationale or early clinical evidence commonly suggest that the effect of the combination treatment is importantly greater than the maximum effect of any of the individual treatments. While these relationships are commonly well-accepted, RCTs do not incorporate them into the design or analysis plans. We therefore propose a simple Bayesian framework for incorporating the known relationships that the effectiveness of a combination treatment exceeds that of any individual treatment, but does not necessarily exceed the sum of individual effects. We term the collation of these two relationships ‘fractional additivity’. We performed a binary outcome simulation study of a response adaptive randomized three-arm clinical trial with treatment arms A, B, and A&B that allowed for dropping an inferior treatment arm and terminating the trial early for superiority during any of 4 interim analyses. We compared the Bayesian fractional additivity model to a conventional analysis by measuring the expected proportion of failures, sample size at trial termination, time to termination, and root mean squared error of final estimates. We also compared the fractional additivity model to a ‘full additivity’ model where the effect of A&B was assumed to be the sum of the effect of A and B. In simulation scenarios where important fractional additivity or full additivity existed, the Bayesian fractional additivity model yielded a 3–4% relative reduction in expected number of failures, and a 30%–50% relative reduction in sample size at trial termination compared to a conventional analysis. These results held true even when the Bayesian fractional additivity model employed a biased prior. The full additivity model had slightly higher gains, but too frequently terminated the trial at the first interim look. In scenarios where no or weak fractional additivity exists, the expected sample size and time to termination were similar for the Bayesian fractional additivity model with a moderately optimistic bias about fractional additivity and the conventional model. Lastly, the fractional additivity model generally yielded similar or lower root mean squared error compared to the other models. In conclusion, our proposed Bayesian fractional additivity model provides an efficient approach for estimating effects of combination treatments in clinical trials. The approach is not only highly applicable in adaptive clinical trials, but also provides added power in a conventional RCT.
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Full frame distilled prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.
Codex and Gemma teacher scores by category
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.338 | 0.918 |
| Meta-epidemiology (narrow) | 0.001 | 0.000 |
| Meta-epidemiology (broad) | 0.009 | 0.004 |
| Bibliometrics | 0.000 | 0.000 |
| Science and technology studies | 0.001 | 0.004 |
| Scholarly communication | 0.000 | 0.001 |
| Open science | 0.005 | 0.002 |
| Research integrity | 0.001 | 0.002 |
| Insufficient payload (model declined to judge) | 0.000 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it