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Record W2885054590 · doi:10.17615/9qtf-tf51

Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies

2010· article· en· W2885054590 on OpenAlexfundno aff
Cathy E. Elks, John R. B. Perry, Patrick Sulem, Daniel I. Chasman, Nora Franceschini, Chunyan He, Kathryn L. Lunetta, Jenny A. Visser, Enda M. Byrne, Diana L. Cousminer, Daníel F. Guðbjartsson, Tõnu Esko, Bjarke Feenstra, Jouke‐Jan Hottenga, Daniel L. Koller, Zoltán Kutalik, Peng Lin, Massimo Mangino, Mara Marongiu, Patrick F. McArdle, Albert V. Smith, Lisette Stolk, Sophie H van Wingerden, Jing Hua Zhao, Eva Albrecht, Tanguy Corre, Erik Ingelsson, Caroline Hayward, Patrik K. E. Magnusson, Erin N. Smith, Shelia Ulivi, Nicole M. Warrington, Lina Zgaga, Helen Alavere, Najaf Amin, Thor Aspelund, Stefania Bandinelli, Inês Barroso, Gerald S. Berenson, Sven Bergmann, Hannah Blackburn, Eric Boerwinkle, Julie E. Buring, Fabio Busonero, Harry Campbell, Stephen J. Chanock, Wei Chen, Marilyn C. Cornelis, David Couper, Andrea D. Coviello, Pio D’Adamo, Ulf dé Fairé, Eco J. C. de Geus, Panos Deloukas, Angela Doering, George Davey Smith, Douglas F. Easton, Guðný Eiríksdóttir, Valur Emilsson, Johan G. Eriksson, Luigi Ferrucci, Aaron R. Folsom, Tatiana Foroud, Melissa Garcia, Paolo Gasparini, Frank Geller, Christian Gieger, Vilmundur Guðnason, Per Hall, Susan E. Hankinson, Liana Ferreli, Andrew C. Heath, Dena Hernandez, Albert Hofman, Frank B. Hu, Thomas Illig, Marjo‐Riitta Järvelin, Andrew D. Johnson, David Karasik, Kay‐Tee Khaw, Douglas P. Kiel, Tuomas O. Kilpelaeinen, Ivana Kolčić, Peter Kraft, Lenore J. Launer, Joop S.E. Laven, Shengxu Li, Jianjun Liu, Daniel Levy, Nicholas G. Martin, Wendy L. McArdle, Mads Melbye, Vincent Mooser, Jeffrey C. Murray, Sarah S. Murray, Michael A. Nalls, Pau Navarro, Mari Nelis, Andy Ness, Kate Northstone, Ben A. Oostra, Munro Peacock, Lyle J. Palmer, Aarno Palotie, Guillaume Paré, Alex Parker, Nancy L. Pedersen, Leena Peltonen, Craig E. Pennell, Paul D.P. Pharoah, Ozren Polašek, Andrew Plump, Anneli Pouta, Eleonora Porcu, Þórunn Rafnar, John P. Rice, Susan M. Ring, Fernando Rivadeneira, Igor Rudan, Cinzia Sala, Veikko Salomaa, Serena Sanna, David Schlessinger, Nicholas J. Schork, Angelo Scuteri, Ayellet V. Segrè, Alan R. Shuldiner, Nicole Soranzo, Ulla Sovio, Sathanur R. Srinivasan, David P. Strachan, Mar-Liis Tammesoo, Emmi Tikkanen, Daniela Toniolo, Kim Tsui, Laufey Tryggvadóttír, J. P. Tyrer, Manuela Uda, Rob M. van Dam, Joyce B. J. van Meurs, Péter Vollenweider, Gérard Waeber, Nicholas J. Wareham, Dawn Waterworth, Michael N. Weedon, H.‐Erich Wichmann, Gonneke Willemsen, James F. Wilson, Alan F. Wright, Lauren Young, Guangju Zhai, Wei Vivian Zhuang, Laura Bierut, Dorret I. Boomsma, Heather A. Boyd, Laura Crisponi, Ellen W. Demerath, Cornelia M. van Duijn, Michael J. Econs, Tamara B. Harris, David J. Hunter, Ruth J. F. Loos, Andres Metspalu, Grant W. Montgomery, Paul M. Ridker, Tim D. Spector, Elizabeth A. Streeten, Kāri Stefánsson, Unnur Þorsteinsdóttir, André G. Uitterlinden, Elisabeth Widén, Joanne M. Murabito, Ken K. Ong, Anna Murray

Bibliographic record

VenueCarolina Digital Repository (University of North Carolina at Chapel Hill) · 2010
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicReproductive Physiology in Livestock
Canadian institutionsnot available
FundersNational Heart, Lung, and Blood InstituteHelmholtz Zentrum MünchenNational Health and Medical Research CouncilMedical Research CouncilCentre for Medical Systems BiologyHjartaverndEgmont FondenChinese Society of Clinical OncologyFondation LeenaardsHjärt-LungfondenFondazione CariploVetenskapsrådetMinistère de l'Education Nationale, de l'Enseignement Superieur et de la RechercheMinistero della SaluteAugustinus FondenEuropean Regional Development FundBundesministerium für Bildung und ForschungWellcome TrustDanmarks GrundforskningsfondMünchner Zentrum für GesundheitswissenschaftenErasmus Medisch CentrumStiftelsen för Strategisk ForskningSchweizerischer Nationalfonds zur Förderung der Wissenschaftlichen ForschungGlaxoSmithKlineNational Cancer InstituteUniversity of BristolAmgenNational Research FoundationSvenska LäkaresällskapetScottish GovernmentEuropean CommissionCompagnia di San PaoloAmerican Heart AssociationNational Science FoundationMarch of Dimes FoundationCanadian Institutes of Health ResearchJuvenile Diabetes Research Foundation International
KeywordsMenarcheGenome-wide association studyGeneticsMeta-analysisAssociation (psychology)Genetic associationBiologyDemographyMedicinePsychologyGenotypeSingle-nucleotide polymorphismGeneInternal medicineEndocrinology

Abstract

fetched live from OpenAlex

To identify loci for age at menarche, we performed a meta-analysis of 32 genome-wide association studies in 87,802 women of European descent, with replication in up to 14,731 women. In addition to the known loci at LIN28B (P=5.4×10−60) and 9q31.2 (P=2.2×10−33), we identified 30 novel menarche loci (all P<5×10−8) and found suggestive evidence for a further 10 loci (P<1.9×10−6). New loci included four previously associated with BMI (in/near FTO, SEC16B, TRA2B and TMEM18), three in/near other genes implicated in energy homeostasis (BSX, CRTC1, and MCHR2), and three in/near genes implicated in hormonal regulation (INHBA, PCSK2 and RXRG). Ingenuity and MAGENTA pathway analyses identified coenzyme A and fatty acid biosynthesis as biological processes related to menarche timing.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.007
metaresearch head score (Gemma)0.012
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (broad)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Meta-analysis · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.997
Threshold uncertainty score0.037

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0070.012
Meta-epidemiology (narrow)0.0020.001
Meta-epidemiology (broad)0.0030.012
Bibliometrics0.0030.005
Science and technology studies0.0010.001
Scholarly communication0.0030.001
Open science0.0020.002
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0030.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.039
GPT teacher head0.228
Teacher spread0.188 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

Study designMeta-analysis
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2010
Admission routes1
Has abstractyes

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