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Record W2885287956 · doi:10.1007/s10681-018-2226-z

The adoption of automated phenotyping by plant breeders

2018· article· en· W2885287956 on OpenAlexafffund
Lana Awada, Peter W.B. Phillips, Stuart J. Smyth

Bibliographic record

VenueEuphytica · 2018
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic Mapping and Diversity in Plants and Animals
Canadian institutionsUniversity of Saskatchewan
FundersCanada First Research Excellence Fund
KeywordsPhenomicsBiologyPlant breedingBiotechnologyGenetic gainScale (ratio)GenomicsGenetic variationAgronomyGenetics

Abstract

fetched live from OpenAlex

Abstract Phenomics or automated phenotyping (AP) is an emerging approach, identified as a priority for future crop breeding research. This approach promises to provide accurate, precise, fast, large-scale, and accumulated phenotyping data which when integrated with corresponding genomic and environmental data is expected to trigger a great leap forward in plant breeding. However, despite promising applications, AP adoption in plant breeding is still in its infancy. It is unclear to many plant breeders how or if much of the enormous volume, diversity, and velocity of imaging and remote-sensing data generated by AP is going to be usefully integrated into breeding programs. This paper develops an economical model of heterogeneous breeders’ decision-making to examine adoption decisions regarding whether to adopt AP or continue using conventional phenotyping. The results of this model indicate that many interlocking factors, including genetic gain/expected return, variable and sunk costs, subsequent rate of technology improvement, and breeders’ level of aversion to AP, are at work as breeders determine whether to adopt AP. This study also provides a numerical example to show the impact of breeders’ aversion toward the adoption of a new technology (e.g., AP) on the expected return generated from breeding a new wheat variety.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.004
metaresearch head score (Gemma)0.009
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.004
Threshold uncertainty score0.021

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0040.009
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.001
Scholarly communication0.0020.001
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.220
Teacher spread0.212 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations56
Published2018
Admission routes2
Has abstractyes

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