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Record W2945905657 · doi:10.1002/ecs2.2753

Enhancing collaboration between ecologists and computer scientists: lessons learned and recommendations forward

2019· article· en· W2945905657 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

fundA Canadian funder is recorded on the work.
no affNo Canadian affiliation: this work is invisible to an affiliation-only frame.
No Canadian affiliation. An affiliation-only frame, the usual design, would never have seen this work. It is one of the works that make the case for inverting the frame.

Bibliographic record

VenueEcosphere · 2019
Typearticle
Languageen
FieldEnvironmental Science
TopicSpecies Distribution and Climate Change
Canadian institutionsnot available
FundersGlobal Lake Ecological Observatory NetworkNational Science Foundation
KeywordsComputer scienceSoftwareEcologyBridging (networking)Data scienceBig dataSupercomputerBiologyData mining

Abstract

fetched live from OpenAlex

Abstract In the era of big data, ecologists are increasingly relying on computational approaches and tools to answer existing questions and pose new research questions. These include both software applications (e.g., simulation models, databases and machine learning algorithms) and hardware systems (e.g., wireless sensor networks, supercomputing, drones and satellites), motivating the need for greater collaboration between computer scientists and ecologists. Here, we outline some synergistic opportunities for scientists in both disciplines that can be gained by building collaborations between the computer science and ecology research communities, with a focus on the benefits to ecology specifically. We also identify past contributions of computer science to ecology, including high‐frequency environmental sensor technology, advanced supercomputing capacity for ecological modeling, databases for long‐term and high‐frequency datasets, and software programs for ecological analyses, to anticipate future potential contributions. These examples highlight the power and potential for further integration of computer science technology and ideas into the ecological research community. Finally, we translate our own experiences working together as a team of computer scientists and ecologists over the past decade into a conceptual framework with recommendations for supporting productive collaborations at the interface of the two disciplines. We specifically focus on how to apply best practices of team science for bridging computer science and ecology, which we advocate will substantially benefit ecology long‐term.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesInsufficient payload (model declined to judge)
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.349
Threshold uncertainty score0.999

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0460.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.028
GPT teacher head0.294
Teacher spread0.266 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it