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Applications for deep learning in ecology

2019· article· en· 681 citations· W2954932437 on OpenAlex· 10.1111/2041-210x.13256

Why is this work in the frame?

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

Canadian affiliationAn author listed a Canadian institution. This is the only route the usual frame has.
Canadian funderA Canadian agency funded it. The work may carry no Canadian affiliation at all.

Full frame distilled prediction

Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

Candidate categories
Insufficient payload (model declined to judge)
Consensus categories
none
Domain
Candidate signal: noneConsensus signal: none
Study design
Candidate signal: ObservationalConsensus signal: Observational
Genre
Candidate signal: EmpiricalConsensus signal: Empirical
Teacher disagreement score
0.032
Threshold uncertainty score
0.997
Validation status
machine_predicted_unvalidated · codex-gemma-dda1882f352a

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0040.000

Machine scores (provisional)

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Opus teacher head0.022
GPT teacher head0.340
Teacher spread
0.318 · how far apart the two teachers sit on this one work
Validation status
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Abstract

Abstract A lot of hype has recently been generated around deep learning, a novel group of artificial intelligence approaches able to break accuracy records in pattern recognition. Over the course of just a few years, deep learning has revolutionized several research fields such as bioinformatics and medicine with its flexibility and ability to process large and complex datasets. As ecological datasets are becoming larger and more complex, we believe these methods can be useful to ecologists as well. In this paper, we review existing implementations and show that deep learning has been used successfully to identify species, classify animal behaviour and estimate biodiversity in large datasets like camera‐trap images, audio recordings and videos. We demonstrate that deep learning can be beneficial to most ecological disciplines, including applied contexts, such as management and conservation. We also identify common questions about how and when to use deep learning, such as what are the steps required to create a deep learning network, which tools are available to help, and what are the requirements in terms of data and computer power. We provide guidelines, recommendations and useful resources, including a reference flowchart to help ecologists get started with deep learning. We argue that at a time when automatic monitoring of populations and ecosystems generates a vast amount of data that cannot be effectively processed by humans anymore, deep learning could become a powerful reference tool for ecologists.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

The record

Venue
Methods in Ecology and Evolution
Topic
Species Distribution and Climate Change
Field
Environmental Science
Canadian institutions
Université de Moncton
Funders
Polar Knowledge Canada
Keywords
Deep learningArtificial intelligenceComputer scienceData scienceFlexibility (engineering)Process (computing)Machine learningEcologyBiology
Has abstract in OpenAlex
yes