Knowledge discovery using SPARQL property path: The case of disease data set
Bibliographic record
Abstract
The Semantic Web allows knowledge discovery on graph-based data sets and facilitates answering complex queries that are extremely difficult to achieve using traditional database approaches. Intuitively, the Semantic Web query language (SPARQL) has a ‘property path’ feature that enables knowledge discovery in a knowledgebase using its reasoning engine. In this article, we utilise the property path of SPARQL and the other Semantic Web technologies to answer sophisticated queries posed over a disease data set. To this aim, we transform data from a disease web portal to a graph-based data set by designing an ontology, present a template to define the queries and provide a set of conjunctive queries on the data set. We illustrate how the reasoning engine of ‘property path’ feature of SPARQL can retrieve the results from the designed knowledgebase. The results of this study were verified by two domain experts as well as authors’ manual exploration on the disease web portal.
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.009 | 0.019 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.001 | 0.001 |
| Bibliometrics | 0.002 | 0.003 |
| Science and technology studies | 0.001 | 0.001 |
| Scholarly communication | 0.003 | 0.007 |
| Open science | 0.002 | 0.003 |
| Research integrity | 0.002 | 0.002 |
| Insufficient payload (model declined to judge) | 0.002 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".