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The Plant Microbiome: From Ecology to Reductionism and Beyond

2020· review· en· 470 citations· W3034766034 on OpenAlex· 10.1146/annurev-micro-022620-014327

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Canadian funderA Canadian agency funded it. The work may carry no Canadian affiliation at all.

No Canadian affiliation. An affiliation-only frame — the usual design — would never have seen this work. It is one of the works that make the case for inverting the frame.

Machine scores (provisional)

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

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Opus teacher head0.022
GPT teacher head0.271
Teacher spread
0.249 · how far apart the two teachers sit on this one work
Validation status
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Abstract

Methodological advances over the past two decades have propelled plant microbiome research, allowing the field to comprehensively test ideas proposed over a century ago and generate many new hypotheses. Studying the distribution of microbial taxa and genes across plant habitats has revealed the importance of various ecological and evolutionary forces shaping plant microbiota. In particular, selection imposed by plant habitats strongly shapes the diversity and composition of microbiota and leads to microbial adaptation associated with navigating the plant immune system and utilizing plant-derived resources. Reductionist approaches have demonstrated that the interaction between plant immunity and the plant microbiome is, in fact, bidirectional and that plants, microbiota, and the environment shape a complex chemical dialogue that collectively orchestrates the plantmicrobiome. The next stage in plant microbiome research will require the integration of ecological and reductionist approaches to establish a general understanding of the assembly and function in both natural and managed environments.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

The record

Venue
Annual Review of Microbiology
Topic
Plant-Microbe Interactions and Immunity
Field
Agricultural and Biological Sciences
Canadian institutions
Funders
Natural Sciences and Engineering Research Council of CanadaU.S. Department of EnergyBiological and Environmental ResearchOffice of ScienceNational Science Foundation
Keywords
MicrobiomeReductionismBiologyEcologyAdaptation (eye)Microbial ecologyPlant ImmunityFunction (biology)TaxonFunctional ecologyEvolutionary biologyEcosystemArabidopsisBacteriaEpistemologyBioinformaticsNeuroscience
Has abstract in OpenAlex
yes