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Record W3036538808 · doi:10.1111/1751-7915.13589

Additive effects of metal excess and superoxide, a highly toxic mixture in bacteria

2020· article· en· W3036538808 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

fundA Canadian funder is recorded on the work.
no affNo Canadian affiliation: this work is invisible to an affiliation-only frame.
No Canadian affiliation. An affiliation-only frame, the usual design, would never have seen this work. It is one of the works that make the case for inverting the frame.

Bibliographic record

VenueMicrobial Biotechnology · 2020
Typearticle
Languageen
FieldEnvironmental Science
TopicChromium effects and bioremediation
Canadian institutionsnot available
FundersInstitute of GeneticsCentre National de la Recherche Scientifique
KeywordsEffluxSuperoxide dismutaseSuperoxideEscherichia coliBacteriaChemistryMicrobiologyPseudomonas putidaReactive oxygen speciesBiochemistryBiologyOxidative stressGeneEnzyme

Abstract

fetched live from OpenAlex

Summary Heavy metal contamination is a serious environmental problem. Understanding the toxicity mechanisms may allow to lower concentration of metals in the metal‐based antimicrobial treatments of crops, and reduce metal content in soil and groundwater. Here, we investigate the interplay between metal efflux systems and the superoxide dismutase (SOD) in the purple bacterium Rubrivivax gelatinosus and other bacteria through analysis of the impact of metal accumulation. Exposure of the Cd 2+ ‐efflux mutant Δ cadA to Cd 2+ caused an increase in the amount and activity of the cytosolic Fe‐Sod SodB, thereby suggesting a role of SodB in the protection against Cd 2+ . In support of this conclusion, inactivation of sodB gene in the Δ cadA cells alleviated detoxification of superoxide and enhanced Cd 2+ toxicity. Similar findings were described in the Cu + ‐efflux mutant with Cu + . Induction of the Mn‐Sod or Fe‐Sod in response to metals in other bacteria, including Escherichia coli , Pseudomonas aeruginosa , Pseudomonas putida , Vibrio cholera and Bacillus subtilis , was also shown. Both excess Cd 2+ or Cu + and superoxide can damage [4Fe‐4S] clusters. The additive effect of metal and superoxide on the [4Fe‐4S] could therefore explain the hypersensitive phenotype in mutants lacking SOD and the efflux ATPase. These findings underscore that ROS defence system becomes decisive for bacterial survival under metal excess.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.016
Threshold uncertainty score0.402

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.003
GPT teacher head0.177
Teacher spread0.174 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it