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Record W3110376154 · doi:10.1186/s13073-020-00810-w

DNA methylation and body mass index from birth to adolescence: meta-analyses of epigenome-wide association studies

2020· review· en· W3110376154 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueGenome Medicine · 2020
Typereview
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicEpigenetics and DNA Methylation
Canadian institutionsUniversité de Sherbrooke
FundersUniversity of Colorado School of Medicine, Anschutz Medical CampusNational Institute of Environmental Health SciencesNational Institute of General Medical SciencesNational Institute of Diabetes and Digestive and Kidney DiseasesCollege of Engineering, Michigan State UniversityNorwegian Institute of Public HealthFaculty of Medicine and Health, University of SydneyMedical Research CouncilAnschutz Medical Campus, University of ColoradoSchool of Medicine, Emory UniversityKlinisk Institut, Syddansk UniversitetNational Institutes of HealthCentre National de la Recherche ScientifiqueUniversitat de BarcelonaTurun YliopistoU.S. Department of Health and Human ServicesEunice Kennedy Shriver National Institute of Child Health and Human DevelopmentNational Jewish HealthKarolinska InstitutetZonMwInstitut National de la Santé et de la Recherche MédicaleCommonwealth Scientific and Industrial Research OrganisationCranfield UniversityNorth Carolina State UniversityUniversità degli Studi di MilanoCurtin University of TechnologyHelsingin YliopistoEuropean CommissionDirectorate for Biological SciencesImperial College LondonOulun YliopistoMedizinischen Hochschule HannoverUniversitair Medisch Centrum GroningenMichigan State UniversityJoint Programming Initiative A healthy diet for a healthy lifeUniversité Grenoble AlpesUniversitat de GironaUniversitat Rovira i VirgiliUniversity of MemphisUniversity of Southern CaliforniaWellcome TrustUniversity of SouthamptonInstitut d'Investigació Sanitària Pere VirgiliSchool of Public Health, Imperial College LondonSyddansk UniversitetEmory UniversityAgence Nationale de la RechercheRijksuniversiteit Groningen
KeywordsEpigenomeDNA methylationHuman geneticsMeta-analysisGeneticsBody mass indexIndex (typography)BiologyComputational biologyMethylationAssociation (psychology)EpigeneticsBioinformaticsMedicineDNAPsychologyComputer scienceInternal medicineGeneWorld Wide WebEndocrinology

Abstract

fetched live from OpenAlex

Abstract Background DNA methylation has been shown to be associated with adiposity in adulthood. However, whether similar DNA methylation patterns are associated with childhood and adolescent body mass index (BMI) is largely unknown. More insight into this relationship at younger ages may have implications for future prevention of obesity and its related traits. Methods We examined whether DNA methylation in cord blood and whole blood in childhood and adolescence was associated with BMI in the age range from 2 to 18 years using both cross-sectional and longitudinal models. We performed meta-analyses of epigenome-wide association studies including up to 4133 children from 23 studies. We examined the overlap of findings reported in previous studies in children and adults with those in our analyses and calculated enrichment. Results DNA methylation at three CpGs (cg05937453, cg25212453, and cg10040131), each in a different age range, was associated with BMI at Bonferroni significance, P < 1.06 × 10 −7 , with a 0.96 standard deviation score (SDS) (standard error (SE) 0.17), 0.32 SDS (SE 0.06), and 0.32 BMI SDS (SE 0.06) higher BMI per 10% increase in methylation, respectively. DNA methylation at nine additional CpGs in the cross-sectional childhood model was associated with BMI at false discovery rate significance. The strength of the associations of DNA methylation at the 187 CpGs previously identified to be associated with adult BMI, increased with advancing age across childhood and adolescence in our analyses. In addition, correlation coefficients between effect estimates for those CpGs in adults and in children and adolescents also increased. Among the top findings for each age range, we observed increasing enrichment for the CpGs that were previously identified in adults (birth P enrichment = 1; childhood P enrichment = 2.00 × 10 −4 ; adolescence P enrichment = 2.10 × 10 −7 ). Conclusions There were only minimal associations of DNA methylation with childhood and adolescent BMI. With the advancing age of the participants across childhood and adolescence, we observed increasing overlap with altered DNA methylation loci reported in association with adult BMI. These findings may be compatible with the hypothesis that DNA methylation differences are mostly a consequence rather than a cause of obesity.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.003
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Review · Consensus signal: Review
Teacher disagreement score0.980
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.003
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0030.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.127
GPT teacher head0.398
Teacher spread0.271 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it