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Computing Maximal Lyndon Substrings of a String

2020· preprint· en· W3125798661 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.
fundA Canadian funder is recorded on the work.

Bibliographic record

VenuePreprints.org · 2020
Typepreprint
Languageen
FieldComputer Science
TopicAlgorithms and Data Compression
Canadian institutionsUniversity of TorontoMcMaster University
FundersNatural Sciences and Engineering Research Council of Canada
KeywordsSubstringSuffix arraySuffix treeGeneralized suffix treeString (physics)AlgorithmTime complexitySuffixCompressed suffix arrayMathematicsCombinatoricsString searching algorithmSortingComputer scienceDiscrete mathematicsData structurePattern matchingArtificial intelligence

Abstract

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There are two reasons to have an efficient algorithm for identifying all maximal Lyndon substrings of a string: firstly, Bannai et al. introduced in 2015 a linear algorithm to compute all runs of a string that relies on knowing all maximal Lyndon substrings of the input string, and secondly, Franek et al. showed in 2017 a linear equivalence of sorting suffixes and sorting maximal Lyndon substrings of a string, inspired by a novel suffix sorting algorithm of Baier. In 2016, Franek et al. presented a brief overview of algorithms for computing the Lyndon array that encodes the knowledge of maximal Lyndon substrings of the input string. Among the presented were two well-known algorithms for computing the Lyndon array: a quadratic in-place algorithm based on iterated Duval's algorithm for Lyndon factorization, and a linear algorithmic scheme based on linear suffix sorting, computing inverse suffix array, and applying to it the Next Smaller Value algorithm. Duval's algorithm works for strings over any ordered alphabet, while for linear suffix sorting, a constant or an integer alphabet is required. The authors at that time were not aware of Baier's algorithm. In 2017, our research group proposed a novel algorithm for the Lyndon array. Though the proposed algorithm is linear in the average case and has O(n log(n)) worst-case complexity, it is interesting as it emulates the fast Fourier algorithm's recursive approach and introduces tau-reduction that might be of independent interest. In 2018, we presented a linear algorithm to compute the Lyndon array of a string inspired by Phase I of Baier's algorithm for suffix sorting. This paper presents theoretical analysis of these two algorithms and provides empirical comparisons of both their C++ implementations with respect to iterated Duval's algorithm.

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Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow), Open science
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.337
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0040.020
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.139
GPT teacher head0.335
Teacher spread0.196 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it