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Record W3200840849 · doi:10.1038/s41591-021-01506-3

Federated learning for predicting clinical outcomes in patients with COVID-19

2021· article· en· W3200840849 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueNature Medicine · 2021
Typearticle
Languageen
FieldComputer Science
TopicPrivacy-Preserving Technologies in Data
Canadian institutionsPublic Health OntarioToronto Public HealthUniversity of TorontoUniversity Health NetworkSchwartz/Reisman Emergency Medicine InstituteSinai Health SystemLunenfeld-Tanenbaum Research Institute
FundersNational Cancer InstituteNational Heart, Lung, and Blood InstituteNIHR Cambridge Biomedical Research CentreFaculty of Medicine, Chulalongkorn UniversityEngineering and Physical Sciences Research CouncilGenentechNational Health Insurance AdministrationNational Institutes of HealthAthinoula A. Martinos Center for Biomedical Imaging, Massachusetts General HospitalMinistry of Science and Technology, TaiwanCambridge University HospitalsCentre d'Imagerie BioMédicaleColgate-Palmolive CompanyBrigham and Women's HospitalChulalongkorn UniversityMassachusetts General HospitalNational Institute for Health and Care ResearchUniversity of California, San FranciscoU.S. National Library of MedicineUniversity of CambridgeFoundation for the National Institutes of HealthDoris Duke Charitable FoundationCancer Research UKNational Taiwan UniversityNational Center for Theoretical SciencesAmerican Association for Dental, Oral, and Craniofacial ResearchDepartment of Health and Social CareChildren's National Hospital
KeywordsGeneralizability theoryCoronavirus disease 2019 (COVID-19)Predictive modellingComputer scienceArtificial intelligenceMedicineEmergency medicineMedical emergencyMachine learningStatisticsInternal medicine

Abstract

fetched live from OpenAlex

Federated learning (FL) is a method used for training artificial intelligence models with data from multiple sources while maintaining data anonymity, thus removing many barriers to data sharing. Here we used data from 20 institutes across the globe to train a FL model, called EXAM (electronic medical record (EMR) chest X-ray AI model), that predicts the future oxygen requirements of symptomatic patients with COVID-19 using inputs of vital signs, laboratory data and chest X-rays. EXAM achieved an average area under the curve (AUC) >0.92 for predicting outcomes at 24 and 72 h from the time of initial presentation to the emergency room, and it provided 16% improvement in average AUC measured across all participating sites and an average increase in generalizability of 38% when compared with models trained at a single site using that site's data. For prediction of mechanical ventilation treatment or death at 24 h at the largest independent test site, EXAM achieved a sensitivity of 0.950 and specificity of 0.882. In this study, FL facilitated rapid data science collaboration without data exchange and generated a model that generalized across heterogeneous, unharmonized datasets for prediction of clinical outcomes in patients with COVID-19, setting the stage for the broader use of FL in healthcare.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.256
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch, Open science
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.509
Threshold uncertainty score0.999

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.256
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0040.009
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.036
GPT teacher head0.364
Teacher spread0.328 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it