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Record W3200840849 · doi:10.1038/s41591-021-01506-3

Federated learning for predicting clinical outcomes in patients with COVID-19

2021· article· en· W3200840849 on OpenAlexaff
Ittai Dayan, Holger R. Roth, Aoxiao Zhong, Ahmed Harouni, Amilcare Gentili, Anas Z. Abidin, Andy Liu, Anthony Costa, Bradford J. Wood, Chien‐Sung Tsai, Chih‐Hung Wang, Chun‐Nan Hsu, C. K. Lee, Peiying Ruan, Daguang Xu, Dufan Wu, Eddie Huang, Felipe Kitamura, Griffin Lacey, Gustavo César de Antônio Corradi, Gustavo Niño, Hao-Hsin Shin, Hirofumi Obinata, Hui Ren, Jason C. Crane, Jesse Tetreault, Jiahui Guan, John W. Garrett, Joshua Kaggie, Jung Gil Park, Keith J. Dreyer, Krishna Juluru, Kristopher Kersten, Marcio Aloísio Bezerra Cavalcanti Rockenbach, Marius George Linguraru, Masoom A. Haider, Meena AbdelMaseeh, Nicola Rieke, Pablo F. Damasceno, Pedro Mário Cruz e Silva, Po‐Chuan Wang, Sheng Xu, Shuichi Kawano, Sira Sriswasdi, Soo Young Park, Thomas M. Grist, Varun Buch, Watsamon Jantarabenjakul, Weichung Wang, Won Young Tak, Xiang Li, Xihong Lin, Young Joon Kwon, Abood Quraini, Andrew Feng, Andrew N. Priest, Barış Türkbey, Benjamin S. Glicksberg, Bernardo C. Bizzo, Byung Seok Kim, Carlos Tor-Díez, Chia‐Cheng Lee, Chia‐Jung Hsu, Chin Lin, Chiu-Ling Lai, Christopher P. Hess, Colin B. Compas, Deepeksha Bhatia, Eric K. Oermann, Evan Leibovitz, Hisashi Sasaki, Hitoshi Mori, Isaac Yang, Jae Ho Sohn, Krishna Nand Keshava Murthy, Li‐Chen Fu, Matheus R. F. Mendonça, Mike Fralick, Min Kyu Kang, Mohammad Adil, Natalie Gangai, Peerapon Vateekul, Pierre Elnajjar, Sarah Hickman, Sharmila Majumdar, Shelley McLeod, Sheridan Reed, Stefan Gräf, Stephanie A. Harmon, Tatsuya Kodama, Thanyawee Puthanakit, Tony Mazzulli, Vitor Lima de Lavor, Yothin Rakvongthai, Yu Rim Lee, Yuhong Wen, Fiona J. Gilbert, Mona G. Flores, Quanzheng Li

Bibliographic record

VenueNature Medicine · 2021
Typearticle
Languageen
FieldComputer Science
TopicPrivacy-Preserving Technologies in Data
Canadian institutionsPublic Health OntarioToronto Public HealthUniversity of TorontoUniversity Health NetworkSchwartz/Reisman Emergency Medicine InstituteSinai Health SystemLunenfeld-Tanenbaum Research Institute
FundersNational Cancer InstituteNational Heart, Lung, and Blood InstituteNIHR Cambridge Biomedical Research CentreFaculty of Medicine, Chulalongkorn UniversityEngineering and Physical Sciences Research CouncilGenentechNational Health Insurance AdministrationNational Institutes of HealthAthinoula A. Martinos Center for Biomedical Imaging, Massachusetts General HospitalMinistry of Science and Technology, TaiwanCambridge University HospitalsCentre d'Imagerie BioMédicaleColgate-Palmolive CompanyBrigham and Women's HospitalChulalongkorn UniversityMassachusetts General HospitalNational Institute for Health and Care ResearchUniversity of California, San FranciscoU.S. National Library of MedicineUniversity of CambridgeFoundation for the National Institutes of HealthDoris Duke Charitable FoundationCancer Research UKNational Taiwan UniversityNational Center for Theoretical SciencesAmerican Association for Dental, Oral, and Craniofacial ResearchDepartment of Health and Social CareChildren's National Hospital
KeywordsGeneralizability theoryCoronavirus disease 2019 (COVID-19)Predictive modellingComputer scienceArtificial intelligenceMedicineEmergency medicineMedical emergencyMachine learningStatisticsInternal medicine

Abstract

fetched live from OpenAlex

Federated learning (FL) is a method used for training artificial intelligence models with data from multiple sources while maintaining data anonymity, thus removing many barriers to data sharing. Here we used data from 20 institutes across the globe to train a FL model, called EXAM (electronic medical record (EMR) chest X-ray AI model), that predicts the future oxygen requirements of symptomatic patients with COVID-19 using inputs of vital signs, laboratory data and chest X-rays. EXAM achieved an average area under the curve (AUC) >0.92 for predicting outcomes at 24 and 72 h from the time of initial presentation to the emergency room, and it provided 16% improvement in average AUC measured across all participating sites and an average increase in generalizability of 38% when compared with models trained at a single site using that site's data. For prediction of mechanical ventilation treatment or death at 24 h at the largest independent test site, EXAM achieved a sensitivity of 0.950 and specificity of 0.882. In this study, FL facilitated rapid data science collaboration without data exchange and generated a model that generalized across heterogeneous, unharmonized datasets for prediction of clinical outcomes in patients with COVID-19, setting the stage for the broader use of FL in healthcare.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.009
metaresearch head score (Gemma)0.018
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: Simulation or modeling
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.009
Threshold uncertainty score0.045

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0090.018
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0020.001
Science and technology studies0.0000.001
Scholarly communication0.0010.001
Open science0.0010.001
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.036
GPT teacher head0.364
Teacher spread0.328 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations720
Published2021
Admission routes1
Has abstractyes

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