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Record W3213980078 · doi:10.7191/jeslib.2021.1220

Data Management for Systematic Reviews: Guidance is Needed

2021· article· en· W3213980078 on OpenAlexaff
Heather Ganshorn, Zahra Premji

Bibliographic record

VenueJournal of eScience Librarianship · 2021
Typearticle
Languageen
FieldDecision Sciences
TopicMeta-analysis and systematic reviews
Canadian institutionsUniversity of Calgary
Fundersnot available
KeywordsSystematic reviewTransparency (behavior)Best practiceData management planComputer scienceData managementData sharingProtocol (science)Plan (archaeology)Process (computing)Process managementKnowledge managementData extractionData scienceManagement scienceEngineeringMEDLINEData miningMedicinePolitical science

Abstract

fetched live from OpenAlex

Data management practices for systematic reviews and other types of knowledge syntheses are variable, with some reviews following open science practices and others with poor reporting practices leading to lack of transparency or reproducibility. Reporting standards have improved the level of detail being shared in published reviews, and also encourage more open sharing of data from various stages of the review process. Similar to project planning or completion of an ethics application, systematic review teams should create a data management plan alongside creation of their study protocol. This commentary provides a brief description of a Data Management Plan Template created specifically for systematic reviews. It also describes the companion LibGuide which was created to provide more detailed examples, and to serve as a living document for updates and new guidance. The creation of the template was funded by the Portage Network.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.574
metaresearch head score (Gemma)0.774
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesMetaresearch
DomainCandidate signal: Reproducibility · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.426
Threshold uncertainty score0.525

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.5740.774
Meta-epidemiology (narrow)0.0060.010
Meta-epidemiology (broad)0.0190.018
Bibliometrics0.0390.060
Science and technology studies0.0040.014
Scholarly communication0.0230.026
Open science0.0100.012
Research integrity0.0240.026
Insufficient payload (model declined to judge)0.0570.075

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.898
GPT teacher head0.557
Teacher spread0.341 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; the direct Gemma label and the distilled Codex classifier agree on what is shown here.

Study designNot applicable
DomainReproducibility
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2021
Admission routes1
Has abstractyes

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