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Robotic Cell Manipulation for Blastocyst Biopsy

2022· article· en· W4285102581 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.
fundA Canadian funder is recorded on the work.

Bibliographic record

Venue2022 International Conference on Robotics and Automation (ICRA) · 2022
Typearticle
Languageen
FieldEngineering
Topic3D Printing in Biomedical Research
Canadian institutionsUniversity of Toronto
FundersUniversity of Toronto
KeywordsBlastocystArtificial intelligenceBiomedical engineeringBiopsyComputer scienceMicroscale chemistryMaterials scienceBiological systemBiologyCell biologyMathematicsEngineeringPathologyMedicineEmbryo

Abstract

fetched live from OpenAlex

Soft tissue cutting is used for incision, separation and removal of tissues or cells. Due to high deformation of soft tissues resulting from their viscosity and elasticity, it is challenging to accurately cut the tissue along a desired path and control the force applied to the tissue for reducing invasiveness, especially at the microscale. This paper presents a robotic biopsy system for cutting and collecting trophectoderm cells from a highly deformable blastocyst. The system, for the first time, enables TE cell junction detection for laser ablation throughout the blastocyst biopsy process by using a convolutional neural network. The overall detection error was 2.13% in every 1,000 cell junctions with position RMSE of <tex xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">$1.63\ \mu \mathrm{m}\pm 0.29\ \mu \mathrm{m}$</tex> . A dynamics model was developed to describe the motion of the trophectoderm cells inside a biopsy micropipette. Based on this model, an adaptive control method was developed for trophectoderm cell aspiration and positioning inside the biopsy micropipette. Experimental results revealed that the controller was capable of effectively compensating for the cell positioning error by updating the varying system parameters according to the adaptation law. The success rate was 100%, the cell aggregate positioning accuracy was <tex xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">$\pm 1\ \mu \mathrm{m}$</tex> , the average settling time was 2 s, and the largest overshoot was <tex xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">$4.3\ \mu \mathrm{m}$</tex> . Compared to manual blastocyst biopsy, the robotic biopsy system shortened the blastocyst's recovery time (35 min vs. 50 min) which indicates lower invasiveness.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: Simulation or modeling
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.881
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.043
GPT teacher head0.289
Teacher spread0.246 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it