MétaCan
Menu
Back to cohort
Record W4293777482 · doi:10.1016/j.crohns.2013.12.013

Second European evidence-based consensus on the prevention, diagnosis and management of opportunistic infections in inflammatory bowel disease

2014· article· en· W4293777482 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueJournal of Crohn s and Colitis · 2014
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicInflammatory Bowel Disease
Canadian institutionsCentre Hospitalier de l’Université de MontréalMcMaster University
Fundersnot available
KeywordsInflammatory bowel diseaseMedicineIntensive care medicineDiseaseInflammatory Bowel DiseasesConsensus conferenceImmunologyInternal medicine

Abstract

fetched live from OpenAlex

The treatment of inflammatory bowel disease (IBD) has been revolutionised over the past decade by the increasing use of immunomodulators. With such immunomodulation, the potential for opportunistic infection is a key safety concern for patients with IBD. Opportunistic infections pose particular problems for the clinician: they are often difficult to recognise and are associated with appreciable morbidity or mortality, because they are potentially serious and hard to treat effectively. This led the European Crohn's and Colitis Organisation (ECCO) to update the previous Consensus meeting on opportunistic infections in IBD. To organise the work, infections were classified into six major topics. Guideline statements of 2009 were analysed systematically by the chairs and the working parties. In parallel, the working parties performed a systematic literature search of their topic with the appropriate key words using Medline/Pubmed and the Cochrane database, as well as their own files. The evidence level (EL) was graded according to the 2011 Oxford Centre for Evidence-Based Medicine (http://www.cebm.net/index.aspx?o=5653). Provisional update guideline statements were then posted on a weblog. Discussions and exchange of the literature evidence among the working party members was then performed on the weblog. The working parties then met in Lille on the 15th–16th of November 2012 to agree on the statements. Consensus was defined as agreement by > 80% of participants, termed a Consensus Statement and numbered for convenience in the document. This paper is the product of work by gastroenterologists, infectious disease experts and pediatricians. It provides guidance on the prevention, detection and management of opportunistic infections in patients of all age categories with IBD. After a section on definitions and risk factors for developing opportunistic infection, there are five sections on different infectious agents, followed by a section on information and guidance for patients with IBD travelling frequently or to less economically developed countries. In the final section, a systematic work up and vaccination programme is proposed for consideration in patients exposed to immunomodulator therapies. The final document on each topic was written by the workgroup leader and their working party. Statements are intended to be read in context with qualifying comments and not read in isolation. The final text was edited for consistency of style by JF Rahier, F Magro, R Eliakim and JF Colombel before being circulated and approved by the participants. In some areas the level of evidence is generally low, which reflects the paucity of randomised controlled trials. Consequently expert opinion is included where appropriate. An immunocompromised host has an alteration in phagocytic, cellular, or humoral immunity that increases the risk of an infectious complication or an opportunistic process. Patients may also be immunocompromised if they have a breach of their skin or mucosal defense barriers that permits microorganisms to cause either local or systemic infection.1 There is no clearcut definition of an immunocompromised state. Three categories are recognised by the Centers for Disease Control,2 depending on the severity of immunosuppression: Persons who are severely immunocompromised not as a result of HIV infection: Severe immunosuppression can be the result of congenital immunodeficiency, leukemia, lymphoma, generalised malignancy or therapy with alkylating agents, antimetabolites, radiation, or high doses of corticosteroids (2 mg/kg body weight, or > 20 mg/day of prednisolone, Section 2.4.1) Persons with HIV infection Persons with conditions that cause limited immune deficits (e.g. hyposplenism and renal failure) An opportunistic infection may be defined as a usually progressive infection by a microorganism that has limited (or no) pathogenic capacity under ordinary circumstances, but which is able to cause serious disease as a result of the predisposing effect of another disease or of its treatment.3 Patients with IBD should not be routinely considered to have altered immunocompetence [EL5] per se, despite evidence of impaired innate mucosal immunity. Different immunomodulators may alter immune responsiveness by different mechanisms and to varying degrees, but there is currently no single method of evaluating the effects of immunosuppression on the immune system [EL5] From genome wide association studies there is increasing evidence of an aberrant immune response in IBD.4 Susceptibility loci involve both the innate and adaptive immune response towards a diminished diversity of commensal microbiota.5 Description of the numerous mechanisms contributing to this dysimmunity is beyond the scope of this article. Despite evidence of defective mucosal immunity, there is no proof of a systemic immune defect in patients with IBD in the absence of concomitant immunomodulator therapy. Patients with IBD are therefore rendered immunocompromised through their treatment. Immunomodulators commonly used in inflammatory bowel disease are corticosteroids, thiopurines, methotrexate, calcineurin inhibitors, anti-tumor necrosis factor agents, or other biologics. Their modes of action differ, but they all compromise to some extent the immune To there is no to immunosuppression in patients with IBD. IBD patients risk of opportunistic infections are with immunomodulators in and with In and a of serious infections should be is an risk factor for opportunistic infections in IBD factors not the to opportunistic infection, but the infection to and to an extent that is not are factors for developing an opportunistic In a were associated with and bowel was therefore also patients with disease and the have defined categories of that are to the to or and that are to the and The immunomodulators commonly used in IBD and associated with an risk of infections corticosteroids, thiopurines, methotrexate, calcineurin inhibitors, and other corticosteroids, a to 20 of for is associated with an risk of infections and infections have all been associated with the use of immunomodulator therapy in IBD. Despite different mechanisms of of can to of a immunomodulator and a of infection has been and that use was commonly associated with with infections and therapy with or There are commonly the infectious be the of that immunomodulators as risk factors for opportunistic infection the are to risk of both and infections in for in were and with and > 20 In the the for all infectious was with > the risk of opportunistic infection There are no in the IBD that a associated with risk of The risk of infections has been to use of corticosteroids in IBD patients corticosteroids and therapy and in the of infectious in a of In this a has therapy to infectious in Crohn's disease but not a different of not an risk with therapy for all therapy is associated with of serious infection in in the of treatment of opportunistic serious infections and of were in patients as in the and for The an risk of serious infections with therapy in Crohn's disease less that for corticosteroids and of all randomised controlled in a risk of opportunistic infections with immunomodulator an risk of infection, to a varying that has not been is the that of immunomodulator therapy in IBD are associated with an in the risk of opportunistic infection risk if immunomodulator was increasing if or were used to microorganisms is a risk factor for opportunistic infection in the immunocompromised with potential of and to areas may the risk of infection in IBD patients on immunomodulators consideration should be to patients and patients who not to be to immunomodulators as that are is to is to high as a with a a with infection or of in an where or other such as or are increases the risk for an opportunistic infection in the who are on immunomodulator microorganisms have been to be of in In both and in have been the of of In less economically developed the immunocompromised may be to and is defined as the of immune that to an of the to infection and to disease and In this there is evidence of in the innate and adaptive immune there is evidence that immune has to the infections commonly in the of the other there are to that infections with such as and infections are to 20 in the in In infections are in with the with the of of and In IBD age has been as an risk factor for of patients age > as a predisposing factor for opportunistic infections to age This was by who also an of opportunistic infections in patients or the of infections and in patients with for IBD as with patients or is of to patients with agents, age has also been as a of infection in a with The evidence in the IBD literature that immunosuppression increases the risk for but infections usually a 20 on in IBD who to an infection In of of IBD are and may be with immune such as altered and patients are to such as have been as risk factors for infection in disease and In IBD have been in as an risk factor for is immunomodulator therapy in patients with the immune system is of the to an immune The immune response can in has a on and is associated with impaired immunity, as well as and and of the to opportunistic infections and to to with cause and of immune the of infections and the impaired response to is in Crohn's disease and as to or often is of is factors to in to of and renal of and of or altered with to bowel and disease or bowel immunity has been in both in and in the and risk of infection has not been in IBD. has been as an risk factor for an risk of in patients with an level It is this was cause or a often reflects as a of infection or disease and is not a of in IBD a or has been associated with opportunistic infection in patients with or of are the body and the of a to a of and is a is of the IBD a to an IBD and immunomodulator therapy in with a 20 be in for using should be should be by detection of This is to the potential risk of as a result of concomitant infection with other or by the effects of Immunomodulators may are not but should be used with The on the severity of IBD and the of the The risk that therapy or with IBD therapy IBD should be the for treatment The the of infection in patients with IBD and its to immunomodulator therapy in patients of were in patients with were to corticosteroids and in to The severity of was for for of This also and for the of an was the cause of In there is a agreement in patients as the of with the of in and In studies have that the The of corticosteroids on disease has been in patients in are associated with and the in this is the of to in IBD patients to be to that in of as is in not to have a effect on the of and not to disease for of with HIV in may In a systematic with on patients who were with agents, for of the evidence that therapy be for infection a of as an to and therapy for patients with to response to a therapy in of patients with with no effect treatment with to or infection are vaccination or for potential infection is not In previous European no agreement be for or in the of to immunomodulators. on in some a and effect with other to and should be can be used in IBD patients of concomitant the other treatment for infection in with Crohn's disease is generally not therapy may this This is in to where therapy not to have an and the inhibitors, are of the which is for the of both and It has been in that the of both and which to serious or In the of or the therapy and may of used for IBD the risk of IBD by therapy or with IBD therapy should be the of treatment and consideration on an There are no of infection developing immunomodulator therapy. of immunomodulator therapy is not IBD patients should be for of IBD to In patients with should also be vaccination is in all patients with IBD. of vaccination is impaired in by the disease and by response should be doses of the may be to of should be in patients risk and for immunomodulator treatment has patients who are should with high to of the of in to Patients with and may have of with therapy used in IBD should be but therapy is not is of is a complication of immunosuppression in the of or in up to if therapy is not of therapy in patients with is by the of immunomodulators on the of infection in IBD be The of of in IBD were treatment and have been the of were other immunomodulators such as corticosteroids or thiopurines, that immunosuppression may studies the of infection in IBD patients and its to therapy have been in to of IBD patients with In of of patients with with The information is the and of immunomodulators in IBD that used in therapy and in other inflammatory conditions immunomodulators. In this of the patients who were treatment with or immunomodulators for a of were for not treatment. was in a Crohn's disease with and with corticosteroids and of infection to be with the immunosuppression used in in to patients IBD patients have to be for infection to infection or vaccination In patients with evidence of infection, and should also be The by infection, in systematic vaccination of all patients In the for vaccination has been the the of as as not in with high but also in or The of infection in IBD is that in the the of to areas may a local In this the of and may cause of to to frequently with a of often The vaccination 20 single and is to in the of IBD in with The of followed by and a if no response is has a the to The response should be to the patients vaccination per of > are to if treatment is the other a has to immune response in patients who and is the in The of is not well but for or in with and high In treatment with is to the of immunomodulators and for their Patients with high should treatment to patients are according to for of and that are and in IBD patients on immunomodulator and are the for IBD patients to their of and of In a of infection is the of may not be In the of immunosuppression with a high and of is for may Crohn's disease but not and may cause may in patients who are but and as well as in with and that of in IBD for is not patients should be routinely for of as well as for in and to on immunomodulator therapy on There are no of infection immunomodulator or therapies. where expert opinion has there is no treatment for infection in in the of immunomodulators disease or the of This has been for corticosteroids which the of by effects on as well as of the immune In IBD patients with infection, immunomodulators should be or of the infection or In treatment is in infection as is for for HIV is for and patients with and should of immunomodulator on of risk and severity of infections in patients immunomodulator therapy immunomodulators are not in patients is for patients risk The effect of corticosteroids on the of HIV infection in IBD patients has been are used as therapy in the treatment of of HIV infections such as or that patients immune is if this which is that used to treat IBD has a effect in HIV disease It is to use corticosteroids for the therapy of IBD patients with HIV infection who have immune and but no are the use of and its effect on HIV infection in IBD patients is with a 20 HIV IBD patients with IBD in HIV patients in HIV patients were The of patients were has been in the of HIV infection, by contributing to HIV through of have also been associated with of HIV infection and the of infectious It has also been proposed that as a of a immune response to may the There some studies on the effects of therapy on the of HIV infection which have been and of IBD patients or patients with have that in HIV a in HIV in a the effect of a therapy with in HIV patients with and > The response to was or to a treatment is difficult to such a that therapy may be to IBD patients with HIV infection and not have the effects on HIV HIV patients may be with if by the of IBD but they should be and to HIV infection are appropriate. to by using and in is appropriate for exposed to or are to be and is appropriate. IBD patients immunomodulator or therapy are for HIV infection HIV and with if infection is to infection, because of the potential of such therapy in HIV It is to the risk of HIV into The of inflammatory bowel disease in patients should be and treatment in with appropriate to the on the effect of immune treatment with on the of concomitant HIV and no are It is to that and immune that IBD patients have infectious IBD therapy if they not The to infection of IBD patients HIV on the of the is the risk may be different to but less increases the the of a with for of was but was potential immunomodulators and of the of are There may be or effects of the different in of or effects HIV infection can immunomodulator therapy but its should be a with Crohn's disease who HIV infection therapy with with this for From a of HIV infection should be according to with appropriate of immunomodulator or therapy should be considered if there is no response to by or in for infection is not before immunomodulator therapy In patients with should be by or before increasing immunomodulator therapy In of with in the immunomodulator therapy should be and of immunomodulators considered In of systemic immunomodulator therapy be therapy is often associated with of This is usually or by a is It is appropriate to a infection by or and disease as have that is frequently in patients with with or but In their were in all patients and or in agree with previous studies that of immunomodulator or therapy is but if therapy is with the of infection immunomodulator treatment may be There is no different are therapy for infection, the potential for not a of infections to for infection in IBD patients is not the patients are Different for the of infection are The high in the that is of limited for the of infection, but detection of can be used to infection in or This patients risk and the are but have of if is and to or are but as an of are to infection and treatment in immunocompromised if of by is not with using are and for infection in or The commonly used for of infection and disease is detection of through in and in the The of are high the potential for and detection in a wide of and and in In patients with has been in in and in of The has been to be a of is the therapy of for After a to for the of the to may be considered if depending on the and local In of or (e.g. is an or not treatment or of immunomodulator therapy and usually or is but associated with a treatment with or other and of is associated with and are for infection is not to of immunomodulator therapy infection is not a to immunomodulator therapy The for therapy should be considered in patients with or infection or immunomodulator therapy there is a is by or as a cause of IBD before increasing immunomodulator therapy In the of disease immunomodulator therapy should be and immunomodulators or and may be and in immunocompromised In a IBD patients therapy skin or with patients on may cause systemic infections with morbidity and and has potential for in immunocompromised may be the of This but complication of is in immunocompromised There is no for Patients should be if they have a of or infection, to and should be for patients with to should be considered for patients with who are therapy. or are as of and infection with but is not and are for Patients with or should be for section for of in skin or the or in doses for often a not of immunomodulators or systemic immunomodulators should not be infection, may be or for is in a with or may cause or therapy for IBD. therapy with or and of are and other or of or treatment can be and the for consideration on a is in patients with but cause or an The risk of is of patients should be by for to a of or of doses of should be for patients should the of to of immunomodulator therapy can be a of all therapy patients should therapy should not be infection with or In the of infection immunomodulator treatment should be and immunomodulator therapy in if therapy can be all have over and has [EL5] is often or in immunocompromised or or In a of in five of 20 of IBD on an risk of for and in a is also with an risk of IBD patients with were thiopurines, as patients evidence of five with In with a of the is with a doses of of and should be by of (or for to the is or or the up in a or they should be for It is to a which may for by patients with IBD should doses of a or the before immunomodulators are should be of all high of (or for a or are to be on high as are prednisolone, or for or for immune should be an with IBD has to or on exposed After patients should be for and in the of the provides both and It is in and a single is routinely for of over of IBD patients immunomodulators before and as for to therapy with of or are not considered to safety and are not as for of that may be in patients with the and safety of this vaccination is not in IBD patients with immunomodulators should and are is not for of or can be in or a skin The of on the are and and can in no and are on the and of the and the of the or not and for have but work is to the and to for are not to to the or action in and therapy should be treatment doses and the or with are to therapy is Immunomodulators should not be or Patients should be and with It may be to immunomodulator therapy for infection before of immunomodulator therapy should be considered In infection immunomodulator therapy may be considered and immunomodulator therapy In the of disease immunomodulator the should be in with appropriate Immunomodulators should be In the in the with of by is the of and the risk of infection in the is associated with a risk of patients and with of infection and of In has an risk of among IBD on In the of therapy a of for of The risk to result in for of but to be with a for In patients on thiopurines, of the were usually of in patients not on therapy. infection may pose a particular among patients under in the infectious associated of infectious have been in patients on is with or renal has been to the risk of in renal but the risk of in IBD is to this should be considered before of immunomodulator then be used in to in patients the The and are for infection is by the detection and the with usually or has a high for or in high risk and but The limited IBD or increases in of associated and by a is to infectious and in to the of for is not an as are often not therapy not the of infectious in therapy may be for have no in the treatment of the limited infection with and and therapy should be or if In infection, therapy with or may be despite the of are for infection, but are should be for and management of of therapy may result in of In the absence of or of is the of therapy for may also be for is for with if with immunomodulators In patients with of immunomodulator therapy should be considered vaccination is for and according to or past infection with is not a for immunomodulator therapy It is immunomodulators can the of the but there are of in immunocompromised studies in an risk of infection and studies in by IBD also that were the risk of infection and a using of and is in In a of and was approved in are and high infection in on local vaccination is for before of In the of or local vaccination to in some depending on of The is in for with vaccination for a can be to immunocompromised IBD to to immunocompromised through age and who not or all doses they were with being with and in this doses of the were and of and to or is a of or and reflects infection the are for of infection, because not all patients and can a or to of is for of a infection, but infection is and usually is limited to the detection of in immunocompromised is as for the is to patients on immunomodulators they have a is not for in the because there is currently no evidence that or treatment the risk of to in this for or of infections are for and studies a of associated with and in with IBD to the The risk of an associated with and has also been to in patients on immunomodulator the a in not in of IBD and In all factors and are if with IBD and on immunomodulators are to have as high risk patients according to local or The that who are immunocompromised should be the of and may be considered for of their infection with is no to and in particular are considered of IBD in with Crohn's and may be associated with infection with of There are of an of in immunocompromised of immunomodulators may be in patients with with on immunomodulators not a there are of in patients who have been on for is with a but the risk of the IBD by has to be considered and with the in patients therapy have been in Patients on immunomodulator therapy are considered to an risk for the of infection vaccination with is an to The is not not to have an on the of inflammatory bowel disease vaccination of patients on immunomodulators is in with is in patients immunomodulator in on therapy patients with a of should treatment in the of or not an has been treatment should be on an in with on the of infection in patients with IBD. the of not in IBD patients immunosuppression is generally considered to the risk of vaccination is the method for infection and is therefore for patients on immunomodulators in the for Disease of are should be used for age and is not for patients on immunomodulators. In the may be used for on IBD patients on immunomodulators are considered to be risk and vaccination has been with and proof of is There is to that vaccination may be less in patients with IBD The use of may also response to the immune response to vaccination in patients with IBD and is not associated with a

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.104
Threshold uncertainty score0.271

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.019
GPT teacher head0.251
Teacher spread0.233 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it