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Record W4387978874 · doi:10.1002/tax.13045

(379–382) Proposals to amend the <i>International Code of Nomenclature for algae, fungi, and plants</i> to ensure that the names of algae and fungi are not subject to uncertainty on the applicability of the rules of any other <i>Code</i> and to further clarify Art. 45.1

2023· article· en· W4387978874 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueTaxon · 2023
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicBotanical Studies and Applications
Canadian institutionsRoyal Ontario Museum
Fundersnot available
KeywordsSubject (documents)NomenclatureCode (set theory)CitationLibrary scienceAlgaeKingdomComputer scienceHistoryBiologyEcologyBotanyTaxonomy (biology)Programming language

Abstract

fetched live from OpenAlex

Alexandrium was published by Halim (in Vie & Milieu, Sér. A, Biol. Mar. 11: 102. 1960). The name applies to a group of thecate dinoflagellates, of which some 30 species are currently recognized (AlgaeBase; https://www.algaebase.org/search/genus/detail/?genus_id=44609). Members of the genus are economically important in forming large blooms, producing so-called red tides, with several species producing toxins that cause Paralytic Shellfish Poisoning when the shellfish are eaten. Halim (l.c.), who was primarily an oceanographer, had returned to his position in the Département d'Océanographie in Alexandria (Egypt) after completing doctoral studies at “la Station zoologique Villefranche” in France. Although his publication lacked any explicit statement as to which Code was being followed, it has long been assumed that, given his background, Halim was using the zoological Code and that the generic name Alexandrium was therefore “available” under the International Code of Zoological Nomenclature (ICZN; Ride & al., Int. Code Zool. Nomencl., ed. 4. 1999; https://www.iczn.org/the-code/the-code-online/) and hence validly published under the provisions of Art. 45.1 of the International Code of Nomenclature for algae, fungi, and plants (ICN; Turland & al. in Regnum Veg. 159. 2018; see footnote to Art. 45.1). The recent interest in the nomenclatural status of Alexandrium arose when Elbrächter & al. (in Taxon 68: 589–590. 2019), considering that the type material of Blepharocysta splendor-maris (Ehrenb.) Ehrenb. was referable to a species of Alexandrium (sensu lato), proposed conservation of Alexandrium against Blepharocysta. In its report on the proposal (Andersen in Taxon 70: 1125. 2021), the Nomenclature Committee for Algae (NCA) stated that “The name ‘Alexandrium’ Halim (Dinophyceae) could not be recommended for conservation because it is not a validly published name.” The rationale given for this conclusion was advice from Francisco Welter-Schultes, Chair of the Editorial Committee for the next edition of the ICZN, to the effect that Halim (l.c.) failed to indicate he was describing an animal (ICZN Art. 1.1.1). The rationale for this decision surprised the members of the NCA and, importantly, the wider audience of users of dinoflagellate names. It also generated extensive correspondence on, among other matters, this particular interpretation of Art. 1.1.1 of the ICZN. Discussion also arose as to whether Silva's opinion (Index Nominum Algarum; https://ucjeps.berkeley.edu/cgi-bin/porp_cgi?160711) that it was “not possible to tell whether author uses ICBN or ICZN” was correct or if there was enough internal evidence to show Halim was using the ICZN. This is not the place to pursue this matter, except to recognize that the existence of divergent opinions on such a case shows that rules should be devised so as to avoid such controversy, and to address the more fundamental issue, implicit in the current wording of Art. 45.1 of the ICN, that, currently, names of algae and fungi may be subject to uncertainty in the interpretation of the rules in Codes other than the ICN. As the mycological and phycological communities have no say in such interpretation, this seems inappropriate, and steps should be taken to preclude this ever happening. Woelkerling & Moestrup (in Taxon 71: 1337–1338. 2022) have suggested addressing the issue by exempting dinoflagellates from certain provisions of the ICN, such as the need for a Latin description or diagnosis. However, I believe that a more general approach is needed – one that deals with all organisms to which Art. 45.1 may apply and not just to dinoflagellates. My proposal below to add a penultimate sentence to Art. 45.1 addresses this need, ensuring that uncertainty in the interpretation of the provisions of another Code is never an issue. “45.1. If a taxon originally assigned to a group not covered by this Code is treated as belonging to the algae or fungi, any of its names need satisfy only the requirements of the relevant other Code that the author was using for status equivalent to valid publication under this Code (but see Art. 54 and F.6.1, regarding homonymy). The Code used by the author is determined through internal evidence, irrespective of any claim by the author as to the group of organisms to which the taxon is assigned. If no clear internal evidence exists to determine the Code being used by the author, names therein need only satisfy the specific requirements for the equivalent of valid publication in any one of the Codes that might have been used regardless of whether or not that Code is deemed applicable. However, a name generated in zoological nomenclature in accordance with the Principle of Coordination is not validly published under this Code unless and until it actually appears in a publication as the accepted name of a taxon.” If Prop. 379 is accepted, I would commend the following Example to the Editorial Committee: The generic name Alexandrium, with one species, A. minutum, was published by Halim (in Vie & Milieu, Sér. A, Biol. Mar. 11: 101–105. 1960) without clear internal evidence of the Code that Halim was following. Halim did not include any Latin description or indicate a type for A. minutum, both requirements at that time under the International Code of Botanical Nomenclature. His names do, however, meet the specific requirements of the International Code of Zoological Nomenclature (Art. 10–20) for availability. Consequently, when treated as algal names, they are validly published under the International Code of Nomenclature for algae, fungi, and plants, despite the fact that the ICZN has been deemed inapplicable to Halim's publication (Andersen in Taxon 70: 1125. 2021). There are also more general problems with the current wording of Art 45.1 that I am taking this opportunity to address. From its first inclusion in the Code, the precursor of the current Art. 45.1 has implicitly assumed that, whatever might have been the situation in the past, there was at that time no longer doubt as to the Code under which any taxon fell. This is reflected in the opening phrase, unchanged since the Leningrad Code (Stafleu & al. in Regnum Veg. 97. 1978): “If a taxon originally assigned to a group not covered by this Code […].” This assumption overlooks the existence of so-called “ambiregnal organisms” currently treated by some under one Code and by others under another. Because it is most commonly for the names of organisms in these groups that the provisions of Art. 45.1 are needed, it should be made clear that they are indeed subject to Art. 45.1. Because the rules being followed by earlier authors are rarely explicitly stated and, indeed, many names were published before any rules existed, it seems worthwhile to recognize this by including the qualifying “appear to have been”. A small rearrangement and rewording of the introductory phrasing will address these concerns. “45.1. If a taxon originally Any of the names of a taxon treated as belonging to the algae or fungi but that were, or appear to have been, published under the provisions of another Code assigned to a group not covered by this Code is treated as belonging to the algae or fungi, any of its names need satisfy only the requirements of the relevant other Code that the author was considered to be using for status equivalent to valid publication under this Code (but see Art. 54 and F.6.1, regarding homonymy). […].” This proposal, if accepted, also permits the following more concise wording that I would refer to the Editorial Committee: “45.1. Any of the names of a taxon treated as belonging to the algae or fungi but that were, or appear to have been, published under the provisions of another Code need satisfy only the requirements of that Code for status equivalent to valid publication under this Code (but see Art. 54 and F.6.1, regarding homonymy). […].” Many names in current use were published prior to the existence of any rules of nomenclature, and the question has been asked as to how to assess the Code considered to be used by the authors of such names. It is implicit that this would be done by internal evidence in the publication, but it would be clearer if this were set out in a Note. Accordingly I propose: “Note 0. Names published prior to the existence of nomenclatural codes are deemed to have been published under whichever Code is suggested by internal evidence.” The point has also been made that the sentence in Art. 45.1 “The Code used by the author is determined through internal evidence, irrespective of any claim by the author as to the group of organisms to which the taxon is assigned” is overly restrictive as the internal evidence sometimes includes statements of taxonomic assignment that by their wording reveal the Code that was being followed. In addition, the phrase “used by the author” might be held to imply the particular edition of the Code involved and not, as is necessarily the case because rules are retroactive, the current edition. To address this, I propose the following further amendments: “45.1. […]. The Code used by the author is determined through internal evidence, irrespective of any claim by the author as to the group of relationships of the organisms to which the taxon is assigned. […].” I am grateful to Vincent Demoulin, Liège, and William Woelkerling, Melbourne, for valuable discussions of this topic and useful suggestions on the wording of the proposals.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.787
Threshold uncertainty score0.199

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.036
GPT teacher head0.248
Teacher spread0.212 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it