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Record W4401433137 · doi:10.5376/mpr.2024.14.0003

Genomic Analysis of Yam: Understanding Its Adaptive Evolution and Medicinal Properties

2024· article· en· W4401433137 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

venuePublished in a venue whose home country is Canada.
no affNo Canadian affiliation: this work is invisible to an affiliation-only frame.
No Canadian affiliation. An affiliation-only frame, the usual design, would never have seen this work. It is one of the works that make the case for inverting the frame.

Bibliographic record

VenueMedicinal Plant Research · 2024
Typearticle
Languageen
FieldMedicine
TopicPhytochemical and Pharmacological Studies
Canadian institutionsnot available
FundersHenan Academy of Agricultural Sciences
KeywordsEvolutionary biologyBiologyComputational biologyAdaptive evolutionBiotechnologyGeneticsGene

Abstract

fetched live from OpenAlex

Yam, commonly known as Shuyu, Tushu, or Shuyao in Chinese, is a traditional Chinese medicinal and edible plant with nutritional and medicinal value.This study aims to elucidate the adaptive evolution and medicinal properties of yam through comprehensive genomic analysis.The study integrates findings from various research efforts, including transcriptome sequencing, chloroplast genome characterization, and metabolomic profiling.Transcriptome analysis has revealed key pathways and hormone activities involved in microtuber formation, highlighting the role of differentially expressed genes in the plant's development and stress responses.Chloroplast genome sequencing has provided insights into the phylogenetic relationships and potential molecular markers for species identification.Metabolomic studies have identified significant metabolites in different parts of the plant, contributing to its medicinal properties.Additionally, the structural characterization of polysaccharides and their bioactivity on gut microbiota underscores the plant's health benefits.The identification of endogenous gibberellins and -glucosidase inhibitors further supports the plant's therapeutic potential.This study consolidates current genomic and biochemical data, offering a comprehensive understanding of yam's adaptive evolution and medicinal properties, thereby providing references for future research and potential biotechnological applications.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.822
Threshold uncertainty score0.460

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.406
GPT teacher head0.420
Teacher spread0.015 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it