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Record W4401660025 · doi:10.1093/evlett/qrae033

The structure of the environment influences the patterns and genetics of local adaptation

2024· article· en· W4401660025 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueEvolution Letters · 2024
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic diversity and population structure
Canadian institutionsUniversity of British Columbia
Fundersnot available
KeywordsLocal adaptationAdaptation (eye)Spatial analysisSpatial ecologySelection (genetic algorithm)Evolutionary biologyGenetic variationEcological geneticsSpatial variabilityGenetic architecturePopulationBiologyVariation (astronomy)EcologyStatisticsComputer scienceGeneticsMathematicsMachine learningPhenotypePhysics

Abstract

fetched live from OpenAlex

Environmental heterogeneity can lead to spatially varying selection, which can, in turn, lead to local adaptation. Population genetic models have shown that the pattern of environmental variation in space can strongly influence the evolution of local adaptation. In particular, when environmental variation is highly autocorrelated in space local adaptation will more readily evolve. However, there have been few attempts to test this prediction empirically or characterize the consequences it would have for the genetic architecture underlying local adaptation. In this study, I analyze a large-scale provenance trial conducted on lodgepole pine and find suggestive evidence that spatial autocorrelation in environmental variation is related to the strength of local adaptation that has evolved in that species. Motivated by those results, I use simulations to model local adaptation to different spatial patterns of environmental variation. The simulations confirm that local adaptation is expected to increase with the degree of spatial autocorrelation in the selective environment, but also show that highly heterogeneous environments are more likely to exhibit high variation in local adaptation, a result not previously described. I find that the spatial pattern of environmental variation influences the genetic architectures underlying local adaptation. In highly autocorrelated environments, the genetic architecture of local adaptation tends to be composed of high-frequency alleles with small phenotypic effects. In weakly autocorrelated environments, locally adaptive alleles may have larger phenotypic effects but are present at lower frequencies across species' ranges and experience more evolutionary turnover. Overall, this work emphasizes the profound importance that the spatial pattern of selection can have on the evolution of local adaptation and how spatial autocorrelation should be considered when formulating hypotheses in ecological and genetic studies.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.838
Threshold uncertainty score0.107

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.005
GPT teacher head0.191
Teacher spread0.185 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it