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Record W4403990420 · doi:10.5376/gab.2024.15.0024

Research Progress in Genome Sequencing and Functional Gene Mining of Cannabis

2024· article· en· W4403990420 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

venuePublished in a venue whose home country is Canada.
no affNo Canadian affiliation: this work is invisible to an affiliation-only frame.
No Canadian affiliation. An affiliation-only frame, the usual design, would never have seen this work. It is one of the works that make the case for inverting the frame.

Bibliographic record

VenueGenomics and Applied Biology · 2024
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicTransgenic Plants and Applications
Canadian institutionsnot available
FundersZhejiang Academy of Agricultural Sciences
KeywordsCannabisGenomeComputational biologyGeneBiologyGeneticsDNA sequencingPsychology

Abstract

fetched live from OpenAlex

The primary goal of this study is to advance the understanding of the Cannabis sativa  genome and to identify functional genes that contribute to its medicinal, industrial, and agricultural applications. Our comprehensive analysis revealed several key findings. Current Cannabis genome assemblies are incomplete, with significant portions missing or unmapped, which hampers accurate gene annotation. Recent advancements in genomics have identified four genes significantly associated with lifetime cannabis use: NCAM1, CADM2, SCOC, and KCNT2, which are linked to various phenotypes such as substance use and body mass index. Additionally, a high-quality reference genome for wild Cannabis sativa  has been developed, providing valuable genetic resources for future research. In silico approaches have been proposed for genome editing, targeting genes involved in cannabinoid biosynthesis, which could lead to novel applications in agriculture and medicine. Furthermore, virus-induced gene silencing (VIGS) methods have been successfully applied to study gene functions in cannabis, demonstrating the potential for functional gene studies. The findings underscore the importance of coordinated efforts to complete and refine Cannabis genome assemblies. The identification of key genes and the development of advanced genomics tools hold significant promise for the genetic improvement of cannabis. These advancements could lead to enhanced medicinal and industrial applications, ultimately benefiting various sectors including agriculture, pharmaceuticals, and biotechnology.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.431
Threshold uncertainty score0.275

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.031
GPT teacher head0.294
Teacher spread0.263 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it